CuGenDBv2

Gene ID	MS017679
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	scaffold373:1466966..1467067
RNA-Seq Expression	MS017679
Synteny	MS017679
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

QKX48849.1 RNA polymerase beta'' subunit [Macleaya cordata]

6.7e-07

88.24

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG QCI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

YP_009524753.1 RNA polymerase beta subunit [Macleaya microcarpa]

6.7e-07

88.24

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG QCI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

YP_009640163.1 RNA polymerase beta'' subunit [Menispermum dauricum]

2.0e-06

85.29

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

YP_009755394.1 RNA polymerase beta'' subunit [Sinomenium acutum]

2.0e-06

85.29

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

YP_010131172.1 RNA polymerase beta'' subunit [Adonis amurensis]

2.0e-06

85.29

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

TrEMBL top hits

e value

%identity

Alignment

A0A1D9CQI1 DNA-directed RNA polymerase subunit beta''

9.4e-07

85.29

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

A0A1W6CEP4 DNA-directed RNA polymerase

9.4e-07

85.29

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

A0A346QCZ4 DNA-directed RNA polymerase subunit beta''

3.2e-07

88.24

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG QCI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

A0A7D5BJM0 DNA-directed RNA polymerase subunit beta''

3.2e-07

88.24

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG QCI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

A0A7H1KG92 DNA-directed RNA polymerase subunit beta''

9.4e-07

85.29

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

SwissProt top hits

e value

%identity

Alignment

A1XGM8 DNA-directed RNA polymerase subunit beta''

5.7e-09

79.41

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADD+YMG +CI IRNQDIG+
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

B1A925 DNA-directed RNA polymerase subunit beta''

1.7e-08

84.85

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Query:  ERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        ERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  ERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

Q09FX1 DNA-directed RNA polymerase subunit beta''

7.4e-09

82.35

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        TERIFIQTLIG +LADDIY+G +CI IRNQDIGI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

Q49L08 DNA-directed RNA polymerase subunit beta''

1.7e-08

84.85

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Query:  ERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        ERIFIQTLIG +LADDIYMG +CI IRNQDIGI
Subjt:  ERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

Q4VZP3 DNA-directed RNA polymerase subunit beta''

1.7e-08

81.82

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Query:  ERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        ERIFIQTLIG +LADDIYMG +CI +RNQDIGI
Subjt:  ERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

1.0e-08

70.59

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Query:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI
        +ERIFIQTLIG +LADDIY+G +C+  RNQD+GI
Subjt:  TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

Sequences

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CDS sequence

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ACGGAAAGAATTTTTATCCAAACATTAATTGGTTGTATATTAGCGGACGATATATATATGGGCATGCAATGCATTGACATTAGAAATCAAGATATTGGTATC

mRNA sequence

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ACGGAAAGAATTTTTATCCAAACATTAATTGGTTGTATATTAGCGGACGATATATATATGGGCATGCAATGCATTGACATTAGAAATCAAGATATTGGTATC

Protein sequence

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TERIFIQTLIGCILADDIYMGMQCIDIRNQDIGI

MS017679 (gene) of Bitter gourd (TR) v1 genome