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MS017685 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017685
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL2-like
Genome locationscaffold373:1521448..1521972
RNA-Seq ExpressionMS017685
SyntenyMS017685
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159502.1 RING-H2 finger protein ATL2-like [Momordica charantia]5.0e-9899.43Show/hide
Query:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF
        MGFLYFAINGHRCSQILHFFTGIFRRLK LGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF
Subjt:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF

Query:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
        WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
Subjt:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR

XP_022996076.1 RING-H2 finger protein ATL46-like [Cucurbita maxima]1.7e-5060.23Show/hide
Query:  MGFLYFAINGHRCSQILH-FFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELK
        MGFL+FAIN    SQILH  FT I  + KLL  + G++KP P+    AD   +RPTSYV +TEG  PSLVTVPA DLQ RIK SLPI+E+GDF  K    
Subjt:  MGFLYFAINGHRCSQILH-FFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELK

Query:  FWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
              E + +EE  +CTICL +ME+SE MREL NCCHVFH++CLDTWIDEF+ITCP+CRSML PAGEGDG  + R
Subjt:  FWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR

XP_023520502.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]5.6e-5765.71Show/hide
Query:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF
        MGF  FAINGHRC QILHFFT I   LKLL    G+LKP P+    AD     PTSY+F+T+  CPSLVTVPA DLQARIK SLPIVEFGDFAAK  ++F
Subjt:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF

Query:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
          +    + EEE   CTICLS+ME+SE MREL NC HVFH+ECLDTWIDEFQITCP+CRS LLP+G+G G R+ R
Subjt:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR

XP_023533023.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]1.1e-4762.5Show/hide
Query:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF
        MGFL+FAING R SQILH FT I  + KLL  + G++KP P+    A+   +RPTSYV +TEG  PSLVTVPA DLQARIK SLPI+E+GDF  K     
Subjt:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF

Query:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRS
             EE+ +EE  +CTICL +ME+SE MRELSNCCHVFH +CLDTWIDEF+ITCP+CRS
Subjt:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRS

XP_038907243.1 RING-H2 finger protein ATL2-like [Benincasa hispida]6.6e-5865.14Show/hide
Query:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF
        MGFLYF+IN H CSQILHFFT I  +LKLL  +  +LK  P+   +AD   DRPTS+VF+TEG C SLVTVPA DLQ RIKKSLPIV F DF AK  ++F
Subjt:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF

Query:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
         E+    EE+EE   CT+CL +ME+SE MREL NCCHVFH+EC D WIDEFQITCP+CRS+LLPAGEG G R+F+
Subjt:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR

TrEMBL top hitse value%identityAlignment
A0A2G9G363 RING-type domain-containing protein3.8e-2743.53Show/hide
Query:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGV----YLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKG
        MGFLY+AI   +   I  FF  IF   +   +    +LG+ KPPP+  E+++ R D   +Y+ + +G  PSLV VP   +   IK  +PI+++ DF  + 
Subjt:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGV----YLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKG

Query:  ELKFWEDWEEEEEEEEKGR--CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP
        +       EEE EE   G   C+ICL  +E   ++REL NC H+FH+ECLDTWIDE Q+TCP+CRSMLLP
Subjt:  ELKFWEDWEEEEEEEEKGR--CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP

A0A6I9TKD6 RING-H2 finger protein ATL80-like5.9e-2843.71Show/hide
Query:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGV----YLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKG
        MGFLY AI   R   I+ FF  IF   + L +     LG+ KPPP++  ++ D  +   +Y+ + +G  PSLV +P   + A IKK +P V+F DF  + 
Subjt:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGV----YLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKG

Query:  ELKFWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLL
                 EEEE  E   C+ICL  +E  +++REL NC HVFH  CLDTW+DE Q+TCP+CRSMLL
Subjt:  ELKFWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLL

A0A6J1AZI3 E3 ubiquitin-protein ligase RHA2B-like2.1e-2544.97Show/hide
Query:  ILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGR
        ++++F  +F   K    +LG+LKPPP+  ED         +YV V +G   SLV VP   + A IKKSLP++E+G F         E + ++++ E    
Subjt:  ILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGR

Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP
        CT+CL  MEKSE++R L  CCHVFHKECLDTW++E Q+TCP+CRS L P
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP

A0A6J1E009 RING-H2 finger protein ATL2-like2.4e-9899.43Show/hide
Query:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF
        MGFLYFAINGHRCSQILHFFTGIFRRLK LGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF
Subjt:  MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKF

Query:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
        WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
Subjt:  WEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR

A0A6J1K3P6 RING-H2 finger protein ATL46-like8.5e-5160.23Show/hide
Query:  MGFLYFAINGHRCSQILH-FFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELK
        MGFL+FAIN    SQILH  FT I  + KLL  + G++KP P+    AD   +RPTSYV +TEG  PSLVTVPA DLQ RIK SLPI+E+GDF  K    
Subjt:  MGFLYFAINGHRCSQILH-FFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELK

Query:  FWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR
              E + +EE  +CTICL +ME+SE MREL NCCHVFH++CLDTWIDEF+ITCP+CRSML PAGEGDG  + R
Subjt:  FWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR

SwissProt top hitse value%identityAlignment
O64763 E3 ubiquitin-protein ligase ATL93.5e-0944.44Show/hide
Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGD
        C +CL + E  E +R +  CCHVFH +C+D W+ E   TCP+CR+ L+   +GD
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGD

Q9SUS5 E3 ubiquitin-protein ligase RHA1B1.6e-0956Show/hide
Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWI-DEFQITCPICRSMLLP
        CT+CLS     +K+R+L  C HVFH  CLD WI D  +ITCPICR+  LP
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWI-DEFQITCPICRSMLLP

Q9XF92 Brassinosteroid-responsive RING protein 11.4e-1036.47Show/hide
Query:  IKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP
        I++ LP+++F +    G     ED  E         C +CL + E  +++R L NC H+FH+ CLD W+D  Q TCP+CR+  +P
Subjt:  IKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP

Q9ZT50 E3 ubiquitin-protein ligase RHA2A5.3e-1052.08Show/hide
Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLL
        C +CLSK+++ E++R+L  C HVFHK+CL+ W+ +F  TCP+CRS L+
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLL

Q9ZU51 E3 ubiquitin-protein ligase RHA2B1.6e-0951.02Show/hide
Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP
        C +CLSK++  E++R+L +C HVFHK+CL+ W+      CP+CRS LLP
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A3.8e-1152.08Show/hide
Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLL
        C +CLSK+++ E++R+L  C HVFHK+CL+ W+ +F  TCP+CRS L+
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLL

AT1G24580.1 RING/U-box superfamily protein6.5e-1150.88Show/hide
Query:  EEEEEEKG-RCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSML
        EEEEEEKG  C +CL   ++ E++ EL +C H FH+ CLD W      TCP+CRS+L
Subjt:  EEEEEEKG-RCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSML

AT2G01150.1 RING-H2 finger protein 2B1.1e-1051.02Show/hide
Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP
        C +CLSK++  E++R+L +C HVFHK+CL+ W+      CP+CRS LLP
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP

AT3G43430.1 RING/U-box superfamily protein8.5e-1143.1Show/hide
Query:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWI--------DEFQITCPICRSMLLPA
        C +CL  +E  +++REL NC HVFH++C+D W+        D+   TCP+CR+ LLP+
Subjt:  CTICLSKMEKSEKMRELSNCCHVFHKECLDTWI--------DEFQITCPICRSMLLPA

AT3G61460.1 brassinosteroid-responsive RING-H21.0e-1136.47Show/hide
Query:  IKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP
        I++ LP+++F +    G     ED  E         C +CL + E  +++R L NC H+FH+ CLD W+D  Q TCP+CR+  +P
Subjt:  IKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCCTCTATTTCGCCATTAACGGCCACCGCTGCTCTCAAATCCTCCATTTCTTCACCGGAATCTTCCGTCGATTGAAGCTCCTGGGGGTGTATTTGGGTGTGCT
GAAGCCGCCGCCGCAGCAACCGGAGGACGCCGACGATCGTGTTGACCGGCCGACGAGTTACGTTTTCGTGACGGAAGGGCTGTGCCCGTCGCTGGTGACGGTTCCGGCGA
CCGATCTCCAGGCGAGGATCAAGAAGAGCCTTCCGATTGTGGAGTTTGGGGACTTTGCAGCGAAAGGGGAACTGAAATTTTGGGAAGATTGGGAAGAAGAAGAAGAAGAA
GAGGAGAAGGGAAGGTGTACGATCTGCTTGAGTAAAATGGAGAAATCGGAGAAGATGAGAGAGCTCTCCAATTGCTGCCATGTCTTCCACAAGGAGTGTTTGGATACGTG
GATAGACGAATTCCAGATTACTTGCCCTATTTGTAGATCCATGCTTTTGCCCGCCGGAGAAGGCGACGGCCTCCGCTATTTCCGT
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCCTCTATTTCGCCATTAACGGCCACCGCTGCTCTCAAATCCTCCATTTCTTCACCGGAATCTTCCGTCGATTGAAGCTCCTGGGGGTGTATTTGGGTGTGCT
GAAGCCGCCGCCGCAGCAACCGGAGGACGCCGACGATCGTGTTGACCGGCCGACGAGTTACGTTTTCGTGACGGAAGGGCTGTGCCCGTCGCTGGTGACGGTTCCGGCGA
CCGATCTCCAGGCGAGGATCAAGAAGAGCCTTCCGATTGTGGAGTTTGGGGACTTTGCAGCGAAAGGGGAACTGAAATTTTGGGAAGATTGGGAAGAAGAAGAAGAAGAA
GAGGAGAAGGGAAGGTGTACGATCTGCTTGAGTAAAATGGAGAAATCGGAGAAGATGAGAGAGCTCTCCAATTGCTGCCATGTCTTCCACAAGGAGTGTTTGGATACGTG
GATAGACGAATTCCAGATTACTTGCCCTATTTGTAGATCCATGCTTTTGCCCGCCGGAGAAGGCGACGGCCTCCGCTATTTCCGT
Protein sequenceShow/hide protein sequence
MGFLYFAINGHRCSQILHFFTGIFRRLKLLGVYLGVLKPPPQQPEDADDRVDRPTSYVFVTEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKFWEDWEEEEEE
EEKGRCTICLSKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR