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MS017690 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017690
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold373:1570205..1570465
RNA-Seq ExpressionMS017690
SyntenyMS017690
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW94236.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]7.2e-1042.05Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK+ SWNVRGLG+  KR ++KD     NPDVV + + K  + +RR V   +W+ RN  WVAL A G+S  IL++W+  ++   + ++G
Subjt:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

RVX04307.1 Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera]5.5e-1043.18Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK+ SWNVRGLG+  KR ++KD     NPDVV + + K    +RR V   +W++RN  WVAL A G+S  IL++W+  ++   + +LG
Subjt:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

RVX11280.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]9.4e-1042.05Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK+ SWNVRGLG+  KR ++KD     NPDVV + + K  + +RR V   +W+ RN  WVAL A G+S  IL++W+  ++   + ++G
Subjt:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]6.5e-1144.32Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        M + +WNVRGLG+  KR  IKD    L PD+V L + K SS+N + ++  LWSS +I W +LDA G+S  I+L+W++ S    + I G
Subjt:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]7.2e-1046.59Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK  +WNVRGL +  K  LIK     LNP+VV L + KLS M+  IV+  LWS+  I W ALDA G ++ IL++WN+  +  A+ I G
Subjt:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

TrEMBL top hitse value%identityAlignment
A0A438CWA7 Transposon TX1 uncharacterized 149 kDa protein4.5e-1042.05Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK+ SWNVRGLG+  KR ++KD     NPDVV + + K  + +RR V   +W++RN  WVAL A G+S  IL++W+  ++   + + G
Subjt:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

A0A438IBZ1 LINE-1 retrotransposable element ORF2 protein3.5e-1042.05Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK+ SWNVRGLG+  KR ++KD     NPDVV + + K  + +RR V   +W+ RN  WVAL A G+S  IL++W+  ++   + ++G
Subjt:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

A0A438J5R7 Beta-arabinofuranosyltransferase RAY12.7e-1043.18Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK+ SWNVRGLG+  KR ++KD     NPDVV + + K    +RR V   +W++RN  WVAL A G+S  IL++W+  ++   + +LG
Subjt:  MKVFSWNVRGLGALPKRTLIKDL----NPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

A0A6J1CVN2 uncharacterized protein LOC1110146573.1e-1144.32Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        M + +WNVRGLG+  KR  IKD    L PD+V L + K SS+N + ++  LWSS +I W +LDA G+S  I+L+W++ S    + I G
Subjt:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

A0A6J1E2G6 uncharacterized protein LOC1110254053.5e-1046.59Show/hide
Query:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG
        MK  +WNVRGL +  K  LIK     LNP+VV L + KLS M+  IV+  LWS+  I W ALDA G ++ IL++WN+  +  A+ I G
Subjt:  MKVFSWNVRGLGALPKRTLIKD----LNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTCTTCTCCTGGAATGTTAGAGGTTTAGGAGCTCTTCCTAAAAGAACTCTAATCAAAGATCTAAATCCAGATGTGGTGTTTCTTCCAGATATGAAACTTAGCAG
TATGAACAGGCGGATTGTTGAGTTTGGACTCTGGAGTTCAAGGAACATAGGCTGGGTTGCGTTAGACGCAGTGGGCTCCTCCACATGCATCTTGCTGATGTGGAATGAGG
CAAGTATTATAGTTGCAGACTCCATTTTAGGC
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTCTTCTCCTGGAATGTTAGAGGTTTAGGAGCTCTTCCTAAAAGAACTCTAATCAAAGATCTAAATCCAGATGTGGTGTTTCTTCCAGATATGAAACTTAGCAG
TATGAACAGGCGGATTGTTGAGTTTGGACTCTGGAGTTCAAGGAACATAGGCTGGGTTGCGTTAGACGCAGTGGGCTCCTCCACATGCATCTTGCTGATGTGGAATGAGG
CAAGTATTATAGTTGCAGACTCCATTTTAGGC
Protein sequenceShow/hide protein sequence
MKVFSWNVRGLGALPKRTLIKDLNPDVVFLPDMKLSSMNRRIVEFGLWSSRNIGWVALDAVGSSTCILLMWNEASIIVADSILG