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MS017704 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017704
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold373:1723174..1723323
RNA-Seq ExpressionMS017704
SyntenyMS017704
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN69137.1 hypothetical protein VITISV_022037 [Vitis vinifera]3.5e-0451.16Show/hide
Query:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN
        +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Subjt:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN

MCH99327.1 ribonuclease H protein [Trifolium medium]2.1e-0443.48Show/hide
Query:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN
        K+GN    SFW D+W  + +L + FP+L+S+ST+K+  V+ LWN++
Subjt:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN

RVW93188.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.4e-0555.81Show/hide
Query:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN
        +GN    SFW DRW  NA L E FP LY+LST KEA V+ +W+
Subjt:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN

RVX03344.1 hypothetical protein CK203_019918 [Vitis vinifera]3.5e-0451.16Show/hide
Query:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN
        +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Subjt:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN

RVX06643.1 SUN domain-containing protein 1 [Vitis vinifera]1.6e-0443.48Show/hide
Query:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN
        K+G  +  +FW DRW  NA+L + FPQLY+L+  + A V+++W+ N
Subjt:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN

TrEMBL top hitse value%identityAlignment
A0A392NHI5 Ribonuclease H protein (Fragment)1.0e-0443.48Show/hide
Query:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN
        K+GN    SFW D+W  + +L + FP+L+S+ST+K+  V+ LWN++
Subjt:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN

A0A438I8Y6 Transposon TX1 uncharacterized 149 kDa protein1.2e-0555.81Show/hide
Query:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN
        +GN    SFW DRW  NA L E FP LY+LST KEA V+ +W+
Subjt:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN

A0A438J305 Uncharacterized protein1.7e-0451.16Show/hide
Query:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN
        +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Subjt:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN

A0A438JCG0 SUN domain-containing protein 17.6e-0543.48Show/hide
Query:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN
        K+G  +  +FW DRW  NA+L + FPQLY+L+  + A V+++W+ N
Subjt:  KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN

A5AKJ3 Uncharacterized protein1.7e-0451.16Show/hide
Query:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN
        +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Subjt:  IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAATTGGCAATAGCAGCTTGGCTAGCTTCTGGCATGACAGGTGGGCTTCCAACGCCTCATTGATTGAGGATTTTCCCCAGCTTTACTCACTCTCTACAAGGAAAGAAGC
TTGTGTTAGCAAACTGTGGAATCAAAACACAACTTCATGG
mRNA sequenceShow/hide mRNA sequence
AAAATTGGCAATAGCAGCTTGGCTAGCTTCTGGCATGACAGGTGGGCTTCCAACGCCTCATTGATTGAGGATTTTCCCCAGCTTTACTCACTCTCTACAAGGAAAGAAGC
TTGTGTTAGCAAACTGTGGAATCAAAACACAACTTCATGG
Protein sequenceShow/hide protein sequence
KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQNTTSW