; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017743 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017743
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTrafficking protein particle complex subunit
Genome locationscaffold373:2073531..2074827
RNA-Seq ExpressionMS017743
SyntenyMS017743
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR007233 - Trafficking protein particle complex subunit
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042588.1 trafficking protein particle complex subunit 1 [Cucumis melo var. makuwa]2.1e-8497.39Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

XP_004145907.1 trafficking protein particle complex subunit 1 [Cucumis sativus]3.6e-8496.73Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

XP_008437540.1 PREDICTED: trafficking protein particle complex subunit 1 [Cucumis melo]2.1e-8497.39Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

XP_022159770.1 trafficking protein particle complex subunit 1 [Momordica charantia]1.1e-8599.35Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRT DLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

XP_038906999.1 trafficking protein particle complex subunit 1 [Benincasa hispida]2.8e-8496.73Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PT TGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNP+YSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

TrEMBL top hitse value%identityAlignment
A0A0A0KM26 Trafficking protein particle complex subunit1.7e-8496.73Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRD LKYIYNLYVEYVVKNP+YSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

A0A1S3AUA1 Trafficking protein particle complex subunit1.0e-8497.39Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

A0A5D3C227 Trafficking protein particle complex subunit1.0e-8497.39Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRD LKYIYNLYVEYVVKNPLYSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

A0A6J1DZQ0 Trafficking protein particle complex subunit5.4e-8699.35Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRT DLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

A0A6J1IAE9 Trafficking protein particle complex subunit1.5e-8396.73Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSP  PTATGNNV+MMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSL+SFTAKMDPTS DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

SwissProt top hitse value%identityAlignment
Q17QI1 Trafficking protein particle complex subunit 16.7e-2544.36Show/hide
Query:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR
        VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS+RSF +KM P     G             F +F+T+ YKL + ETP+GIK+++ T   
Subjt:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR

Query:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR
         G +RD L +IY+ LYVE VVKNPL   G  ++
Subjt:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR

Q2KMM2 Trafficking protein particle complex subunit 11.0e-2545.11Show/hide
Query:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR
        VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS+RSF +KM P     G             F SF+T+ YKL + ETP+GIK+++ T   
Subjt:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR

Query:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR
         G +RD L +IY+ LYVE+VVKNPL   G  ++
Subjt:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR

Q557G3 Trafficking protein particle complex subunit 11.2e-2640.15Show/hide
Query:  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRT
        ++ +YIFN++G C++Y +WN+  ++ N  +D KL+FG+L+SL++F     P   D               FH ++T+TYKL + ET S IK I+++ P  
Subjt:  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPRT

Query:  GDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR
         DLRD LK IY+ ++VEYV+KNP+Y  GT ++
Subjt:  GDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR

Q5NCF2 Trafficking protein particle complex subunit 11.0e-2545.11Show/hide
Query:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR
        VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS+RSF +KM P     G             F SF+T+ YKL + ETP+GIK+++ T   
Subjt:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR

Query:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR
         G +RD L +IY+ LYVE+VVKNPL   G  ++
Subjt:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR

Q9Y5R8 Trafficking protein particle complex subunit 16.7e-2544.36Show/hide
Query:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR
        VH +Y+F+RNGVCL Y EW+R  +   P ++++KLM+G+LFS+RSF +KM P     G             F +F+T+ YKL + ETP+GIK+++ T   
Subjt:  VHMMYIFNRNGVCLFYREWNRPLRTLNP-QQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPSGIKIILVTHPR

Query:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR
         G +RD L +IY+ LYVE VVKNPL   G  ++
Subjt:  TGDLRDSLKYIYN-LYVEYVVKNPLYSPGTPIR

Arabidopsis top hitse value%identityAlignment
AT1G51160.1 SNARE-like superfamily protein1.4e-8187.58Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGLLFSL+S TAKMDP + DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSF ETPSGIKIILVTHP+TGDLR+SLKYIY+LYVEYVVKNP+YSPG+PI+
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

AT1G51160.2 SNARE-like superfamily protein1.4e-8187.58Show/hide
Query:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT
        MQFFGGSEISPSPP PTA+GNN HMMY+FNRNGVCL Y+EWNRPL TLNPQQDHKLMFGLLFSL+S TAKMDP + DKGNLGVPQLPGQGCSFHSFRTNT
Subjt:  MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNT

Query:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        YKLSF ETPSGIKIILVTHP+TGDLR+SLKYIY+LYVEYVVKNP+YSPG+PI+
Subjt:  YKLSFTETPSGIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR

AT5G02280.1 SNARE-like superfamily protein4.8e-1027.27Show/hide
Query:  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPR
        ++ +YI N++G  +FY++     R      D   +  L  S+ + + ++ P +              GCS       +T+ L   ++  G K  +V  P 
Subjt:  VHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCS-FHSFRTNTYKLSFTETPSGIKIILVTHPR

Query:  TGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR
        T  +   L+YIY LY +YV+KNP Y    PIR
Subjt:  TGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGCCCCGACAGCAACAGGAAACAATGTGCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTT
CTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAGATCCTTTACTGCCAAGATGGACCCAA
CCAGTACTGATAAAGGCAATCTTGGGGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACAAATACCTACAAGCTCAGTTTTACTGAAACTCCATCA
GGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTAAGAGACTCATTAAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAG
TCCAGGAACCCCAATCAGG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTCTTTGGTGGGTCAGAGATTAGCCCTTCGCCTCCGGCCCCGACAGCAACAGGAAACAATGTGCATATGATGTATATTTTCAATAGGAATGGAGTTTGCTTGTT
CTACAGGGAGTGGAATCGGCCTCTCCGGACATTGAATCCCCAGCAAGACCACAAACTTATGTTTGGTTTGCTCTTCTCGCTCAGATCCTTTACTGCCAAGATGGACCCAA
CCAGTACTGATAAAGGCAATCTTGGGGTGCCTCAGTTACCTGGCCAAGGTTGTTCGTTTCACAGTTTTCGTACAAATACCTACAAGCTCAGTTTTACTGAAACTCCATCA
GGGATAAAGATTATTCTGGTTACCCATCCTAGAACCGGTGATCTAAGAGACTCATTAAAGTACATCTACAACTTGTATGTTGAATATGTAGTGAAAAATCCACTCTACAG
TCCAGGAACCCCAATCAGG
Protein sequenceShow/hide protein sequence
MQFFGGSEISPSPPAPTATGNNVHMMYIFNRNGVCLFYREWNRPLRTLNPQQDHKLMFGLLFSLRSFTAKMDPTSTDKGNLGVPQLPGQGCSFHSFRTNTYKLSFTETPS
GIKIILVTHPRTGDLRDSLKYIYNLYVEYVVKNPLYSPGTPIR