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MS017767 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017767
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSm-like protein LSM2
Genome locationscaffold373:2346592..2348971
RNA-Seq ExpressionMS017767
SyntenyMS017767
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0071472 - cellular response to salt stress (biological process)
GO:0006414 - translational elongation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0000932 - P-body (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0005525 - GTP binding (molecular function)
GO:0003924 - GTPase activity (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016654 - U6 snRNA-associated Sm-like protein LSm2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2970238.1 sm LSM2 [Olea europaea subsp. europaea]2.0e-4597.85Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        QLFFSYFKDLVGREVTVELKNDLA+RGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVD+ELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

MBA0708852.1 hypothetical protein [Gossypium laxum]9.0e-46100Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

MBA0715229.1 hypothetical protein [Gossypium laxum]2.6e-4598.92Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

OWM87166.1 hypothetical protein CDL15_Pgr010198 [Punica granatum]2.6e-4598.92Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

THG15486.1 hypothetical protein TEA_020719 [Camellia sinensis var. sinensis]2.0e-4598.92Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

TrEMBL top hitse value%identityAlignment
A0A061DXU9 BTB-POZ and MATH domain 21.3e-4598.92Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A1R3I5D7 BTB/POZ-like protein1.3e-4598.92Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A4S4EHZ0 Uncharacterized protein9.7e-4698.92Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        +LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

A0A7J8ZBA4 Sm domain-containing protein (Fragment)4.4e-46100Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

F6HQ57 Sm-like protein LSM21.3e-4598.92Show/hide
Query:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVDIELLHDATRREARGG
Subjt:  QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

SwissProt top hitse value%identityAlignment
O35900 U6 snRNA-associated Sm-like protein LSm29.1e-3374.16Show/hide
Query:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

P38203 U6 snRNA-associated Sm-like protein LSm22.2e-2665.91Show/hide
Query:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE
        LFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN FIRGS VRYV L  + VD  LL DATRRE
Subjt:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE

Q1H595 Sm-like protein LSM21.6e-4594.57Show/hide
Query:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

Q54TF6 Probable U6 snRNA-associated Sm-like protein LSm23.2e-3066.67Show/hide
Query:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR
        LFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV LP + VD+E L D +R EAR
Subjt:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR

Q9Y333 U6 snRNA-associated Sm-like protein LSm29.1e-3374.16Show/hide
Query:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA
        LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Subjt:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA

Arabidopsis top hitse value%identityAlignment
AT1G03330.1 Small nuclear ribonucleoprotein family protein1.1e-4694.57Show/hide
Query:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG
        LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARGG
Subjt:  LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG

AT3G07590.1 Small nuclear ribonucleoprotein family protein2.4e-0429.87Show/hide
Query:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT3G07590.2 Small nuclear ribonucleoprotein family protein2.4e-0429.87Show/hide
Query:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL

AT3G59810.1 Small nuclear ribonucleoprotein family protein4.1e-0433.85Show/hide
Query:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV
        + K + GR V V+L + +  RGTL  +D Y+NI +E T      +  +     + FIRG+ V Y+
Subjt:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV

AT4G02840.1 Small nuclear ribonucleoprotein family protein2.4e-0429.87Show/hide
Query:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL
        +   L    V++ELKN   + GT+  VD  +N  L+  ++  + K P  +++ +  +RG+ +RY  L PD +++E L
Subjt:  YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAA
CATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGC
CAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC
mRNA sequenceShow/hide mRNA sequence
CAGTTGTTTTTCTCGTACTTCAAGGATTTGGTGGGCAGAGAGGTGACGGTCGAGTTGAAGAACGACCTAGCGATTAGAGGAACTTTGCACTCTGTCGATCAATATCTCAA
CATCAAACTTGAAAACACGAGGGTTGTTGATCAAGACAAATACCCTCATATGCTTTCAGTGAGAAACTGTTTTATCAGGGGGTCGGTGGTGAGATATGTTCAACTTCCGC
CAGATGGTGTTGATATCGAGCTCTTGCATGATGCCACAAGACGCGAGGCTCGGGGTGGC
Protein sequenceShow/hide protein sequence
QLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARGG