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MS017827 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017827
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationscaffold373:2977417..2978512
RNA-Seq ExpressionMS017827
SyntenyMS017827
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]5.6e-3871.09Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SDAV P AL+S  SL       + DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK

Query:  FGLNPPKDIETLLKAGKVQLECLWDGRV
         GLNPPK+IE+LLK GKVQLECLW  R+
Subjt:  FGLNPPKDIETLLKAGKVQLECLWDGRV

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]1.1e-3872.87Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  SDAV P ALVS  SL       + DDY  SEN LRQFDMN+AYGPCLGMTRM RWERA 
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR

Query:  KFGLNPPKDIETLLKAGKVQLECLWDGRV
          GLNPPKDI TLLKAGKVQLECLWD RV
Subjt:  KFGLNPPKDIETLLKAGKVQLECLWDGRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]2.3e-3973.64Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS  SL       + DDY ESENMLRQFDMN AYGPCLGMTRM RWERA 
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR

Query:  KFGLNPPKDIETLLKAGKVQLECLWDGRV
          GLNPPKDI TLLKAGKVQLECLWD RV
Subjt:  KFGLNPPKDIETLLKAGKVQLECLWDGRV

XP_022156193.1 DNA polymerase delta subunit 4 [Momordica charantia]1.8e-5792.19Show/hide
Query:  ATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
        ATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS         LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
Subjt:  ATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK

Query:  FGLNPPKDIETLLKAGKVQLECLWDGRV
        FGLNPPKDIETLLKAG+VQLECLWDGRV
Subjt:  FGLNPPKDIETLLKAGKVQLECLWDGRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]5.6e-3871.09Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SD V P AL+S  SL       + DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK

Query:  FGLNPPKDIETLLKAGKVQLECLWDGRV
         GLNPPK+IETLLK GKVQLECLW  R+
Subjt:  FGLNPPKDIETLLKAGKVQLECLWDGRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein5.4e-3972.87Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  SDAV P ALVS  SL       + DDY  SEN LRQFDMN+AYGPCLGMTRM RWERA 
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR

Query:  KFGLNPPKDIETLLKAGKVQLECLWDGRV
          GLNPPKDI TLLKAGKVQLECLWD RV
Subjt:  KFGLNPPKDIETLLKAGKVQLECLWDGRV

A0A1S3CT23 DNA polymerase delta subunit 41.1e-3973.64Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS  SL       + DDY ESENMLRQFDMN AYGPCLGMTRM RWERA 
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR

Query:  KFGLNPPKDIETLLKAGKVQLECLWDGRV
          GLNPPKDI TLLKAGKVQLECLWD RV
Subjt:  KFGLNPPKDIETLLKAGKVQLECLWDGRV

A0A5A7UNL0 DNA polymerase delta subunit 41.1e-3973.64Show/hide
Query:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR
        S RGG+KDFYKQ K  GISK K  KPSSRKTKSPAN+A+  S+AV P ALVS  SL       + DDY ESENMLRQFDMN AYGPCLGMTRM RWERA 
Subjt:  SARGGMKDFYKQTKKGGISKPK-PKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERAR

Query:  KFGLNPPKDIETLLKAGKVQLECLWDGRV
          GLNPPKDI TLLKAGKVQLECLWD RV
Subjt:  KFGLNPPKDIETLLKAGKVQLECLWDGRV

A0A6J1DPY8 DNA polymerase delta subunit 48.9e-5892.19Show/hide
Query:  ATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
        ATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSS         LDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
Subjt:  ATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK

Query:  FGLNPPKDIETLLKAGKVQLECLWDGRV
        FGLNPPKDIETLLKAG+VQLECLWDGRV
Subjt:  FGLNPPKDIETLLKAGKVQLECLWDGRV

A0A6J1H180 uncharacterized protein LOC1114591432.7e-3871.09Show/hide
Query:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK
        SARGGMKDFYKQ K  G+SK   KPSSRKTKS AN+A   SD V P AL+S  SL       + DDY ESEN+LRQFDMN AYGPCLGMTRMERWE ARK
Subjt:  SARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVS--SLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARK

Query:  FGLNPPKDIETLLKAGKVQLECLWDGRV
         GLNPPK+IETLLK GKVQLECLW  R+
Subjt:  FGLNPPKDIETLLKAGKVQLECLWDGRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 48.2e-0846.94Show/hide
Query:  DDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLL
        ++ ++ E +L  FD  + YGP LGMTRM+RW+RA+ F LNPP+ +  +L
Subjt:  DDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLL

Q3T0X9 DNA polymerase delta subunit 49.6e-0944.07Show/hide
Query:  ESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GKVQLEC-LW
        E   +LRQFD+   YGPC G+TR++RW RA + GL PP ++  +L++  G  + +C LW
Subjt:  ESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 44.8e-0853.49Show/hide
Query:  MLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA
        +LRQFD+   YGPC G+TR++RW RA + GL PP ++  +LKA
Subjt:  MLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 41.3e-0846.03Show/hide
Query:  DYSESE-NMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GKVQLEC-LW
        D  E+E  +LRQFD+   YGPC G+TR++RW RA++ GL PP ++  +LK   G  + +C LW
Subjt:  DYSESE-NMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIETLLKA--GKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 41.4e-3158.78Show/hide
Query:  ATSARGGMKDFYKQTKK---GGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWER
        AT+A+  +K FYKQTK    GGIS  K KPSSRK  +P +AAA  SD   P AL+S      LN   +DY + E MLRQFDMN  YGPCLGMTR++RWER
Subjt:  ATSARGGMKDFYKQTKK---GGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWER

Query:  ARKFGLNPPKDIETLLKAGKVQLECLWDGRV
        A + G+NPP +IE LLK GKVQ +CLW GRV
Subjt:  ARKFGLNPPKDIETLLKAGKVQLECLWDGRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGACATCGGCGCGAGGAGGGATGAAGGATTTCTACAAGCAAACGAAAAAGGGCGGAATCTCCAAGCCCAAGCCCAAGCCCTCTTCCCGGAAGACCAAATCTCCGGCCAA
CGCTGCCGCTTCCGCCTCCGACGCCGTTCACCCGCCGGCTCTCGTTTCTTCGTTAGTTTGTTTCATTTTGAATTTTGTTTTAGATGATTACAGCGAGTCTGAGAATATGC
TGAGGCAATTTGATATGAACAGTGCCTATGGTCCTTGCCTTGGAATGACTAGAATGGAACGGTGGGAGCGTGCTCGTAAGTTTGGTTTGAACCCTCCAAAAGACATTGAG
ACACTCTTAAAGGCTGGCAAAGTGCAGTTAGAGTGCTTGTGGGATGGCCGAGTT
mRNA sequenceShow/hide mRNA sequence
GCGACATCGGCGCGAGGAGGGATGAAGGATTTCTACAAGCAAACGAAAAAGGGCGGAATCTCCAAGCCCAAGCCCAAGCCCTCTTCCCGGAAGACCAAATCTCCGGCCAA
CGCTGCCGCTTCCGCCTCCGACGCCGTTCACCCGCCGGCTCTCGTTTCTTCGTTAGTTTGTTTCATTTTGAATTTTGTTTTAGATGATTACAGCGAGTCTGAGAATATGC
TGAGGCAATTTGATATGAACAGTGCCTATGGTCCTTGCCTTGGAATGACTAGAATGGAACGGTGGGAGCGTGCTCGTAAGTTTGGTTTGAACCCTCCAAAAGACATTGAG
ACACTCTTAAAGGCTGGCAAAGTGCAGTTAGAGTGCTTGTGGGATGGCCGAGTT
Protein sequenceShow/hide protein sequence
ATSARGGMKDFYKQTKKGGISKPKPKPSSRKTKSPANAAASASDAVHPPALVSSLVCFILNFVLDDYSESENMLRQFDMNSAYGPCLGMTRMERWERARKFGLNPPKDIE
TLLKAGKVQLECLWDGRV