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MS017830 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017830
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold373:3016316..3016614
RNA-Seq ExpressionMS017830
SyntenyMS017830
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.4e-0741.33Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC
        N +G FE VESN     WG  LR+R+   + +  +   +L +   +   WIPI YE+LP+F Y CG+L H  KDC
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.2e-0838.75Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCRNPYV
        N +G F  V+ NE G  WG  LRIR+ + I +      ++ +   +   WIPI YE+LP+FCY CG + H++ DC   Y+
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCRNPYV

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]1.8e-0744Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC
        N +G  E V+  +    WGE LRIR+ V I++       +K+G      WI   YE+LPNFCY CGKL H  KDC
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC

XP_040991016.1 uncharacterized protein LOC121238254 [Juglans microcarpa x Juglans regia]1.0e-0733.33Show/hide
Query:  VGRFEAVESNEYGQRWGEMLRIRIV-TIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC-------------RNPYVVWAMAPGYW
        +G  E V+  +    WGE LR+++   +        +L +G   +  WI   YE+LPNFCY CG++ HT KDC               PY VW  A  + 
Subjt:  VGRFEAVESNEYGQRWGEMLRIRIV-TIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC-------------RNPYVVWAMAPGYW

Query:  LITASINQTRF
          T   NQ RF
Subjt:  LITASINQTRF

XP_042952131.1 uncharacterized protein LOC122289219 [Carya illinoinensis]3.0e-0742.67Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC
        N +G  E V+  +    WGE +RIR+ + I++      R+K+G      WI   YE+LPNFCY CGKL H  KDC
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein5.4e-1039.77Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIR-IVTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCRNPYVVWAMAPGY
        N +  FE VE +E  + +GE+L++R  + + +S   E  +K+G M  EK IP+ YEKL +FCY CG L H  ++C     V    PGY
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIR-IVTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCRNPYVVWAMAPGY

A0A2N9E949 CCHC-type domain-containing protein8.6e-0835.53Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCR
        N +G  E ++  E G  WGE +R+++ + ++      +R+K+G   +  W+ + YEKLP FCY CG L H+ ++CR
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCR

A0A2N9G3M9 CCHC-type domain-containing protein8.6e-0835.53Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCR
        N +G  E ++  E G  WGE +R+++ + ++      +R+K+G   +  W+ + YEKLP FCY CG L H+ ++CR
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCR

A0A6J1BSZ1 uncharacterized protein LOC1110054816.5e-0841.33Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC
        N +G FE VESN     WG  LR+R+   + +  +   +L +   +   WIPI YE+LP+F Y CG+L H  KDC
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDC

A0A6J1DU55 uncharacterized protein LOC1110231355.9e-0938.75Show/hide
Query:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCRNPYV
        N +G F  V+ NE G  WG  LRIR+ + I +      ++ +   +   WIPI YE+LP+FCY CG + H++ DC   Y+
Subjt:  NVVGRFEAVESNEYGQRWGEMLRIRI-VTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCRNPYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATGTAGTTGGGCGTTTTGAGGCAGTAGAAAGCAACGAATATGGTCAACGTTGGGGAGAGATGTTGCGTATCAGAATCGTGACAATAGCACGAAGCTCCTACGAAGAAGA
GCGTCTAAAGGTAGGACCTATGGTGGATGAAAAGTGGATCCCCATTATATACGAGAAACTACCAAACTTCTGTTATGGATGTGGGAAGCTTCGTCATACTGCTAAAGATT
GCAGAAACCCTTATGTAGTATGGGCCATGGCTCCAGGCTATTGGCTCATCACAGCAAGCATCAACCAAACCAGATTT
mRNA sequenceShow/hide mRNA sequence
AATGTAGTTGGGCGTTTTGAGGCAGTAGAAAGCAACGAATATGGTCAACGTTGGGGAGAGATGTTGCGTATCAGAATCGTGACAATAGCACGAAGCTCCTACGAAGAAGA
GCGTCTAAAGGTAGGACCTATGGTGGATGAAAAGTGGATCCCCATTATATACGAGAAACTACCAAACTTCTGTTATGGATGTGGGAAGCTTCGTCATACTGCTAAAGATT
GCAGAAACCCTTATGTAGTATGGGCCATGGCTCCAGGCTATTGGCTCATCACAGCAAGCATCAACCAAACCAGATTT
Protein sequenceShow/hide protein sequence
NVVGRFEAVESNEYGQRWGEMLRIRIVTIARSSYEEERLKVGPMVDEKWIPIIYEKLPNFCYGCGKLRHTAKDCRNPYVVWAMAPGYWLITASINQTRF