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MS017837 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017837
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold373:3073413..3073523
RNA-Seq ExpressionMS017837
SyntenyMS017837
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0046621 - negative regulation of organ growth (biological process)
GO:0016020 - membrane (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0031624 - ubiquitin conjugating enzyme binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6154434.1 hypothetical protein GIB67_028326 [Kingdonia uniflora]1.1e-0556.76Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV
        C +C M +K KD++TTLPC H+YH  C+  WLK NKV
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV

KAG7533902.1 Zinc finger RING-type [Arabidopsis thaliana x Arabidopsis arenosa]3.1e-0554.05Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV
        C++CI+D++  D +TTLPC H +H+ CI  WLK+NKV
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV

KAG7537601.1 Zinc finger RING-type [Arabidopsis suecica]3.1e-0554.05Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV
        C++CI+D++  D +TTLPC H +H+ CI  WLK+NKV
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV

TQD88009.1 hypothetical protein C1H46_026432 [Malus baccata]1.8e-0555.56Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        C++C+M++K  D +TTLPCSH+YH+ CI  WL++NK
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

XP_040257082.1 probable E3 ubiquitin-protein ligase RHC1A [Aegilops tauschii subsp. strangulata]2.3e-0568.75Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL
        CAVC+ DFKV D VTT+PC H +HQ CIY WL
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL

TrEMBL top hitse value%identityAlignment
A0A3B6DKS4 RING-type domain-containing protein1.1e-0568.75Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL
        CAVC+ DFKV D VTT+PC H +HQ CIY WL
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL

A0A453D955 RING-type domain-containing protein1.1e-0568.75Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL
        CAVC+ DFKV D VTT+PC H +HQ CIY WL
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL

A0A540LNW4 RING-type domain-containing protein8.7e-0655.56Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        C++C+M++K  D +TTLPCSH+YH+ CI  WL++NK
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

A0A5J5AWA0 RING-type domain-containing protein2.5e-0558.33Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        C +C M +K  D +TTLPC+H+YH  CI TWLK NK
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

A0A7J7MI35 RING-type domain-containing protein5.1e-0656.76Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV
        C +C M +K KD++TTLPC H+YH  C+  WLK NKV
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV

SwissProt top hitse value%identityAlignment
Q3U2C5 E3 ubiquitin-protein ligase RNF1497.6e-0755.56Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        CAVCI +FKVKD++  LPC H +H+ CI  WL D++
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

Q3UHJ8 RING finger protein 442.9e-0647.22Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        C VC  DF+V+ ++  LPC+HE+H  C+  WLK N+
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

Q4V7B8 RING finger protein 442.9e-0647.22Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        C VC  DF+V+ ++  LPC+HE+H  C+  WLK N+
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

Q8BI21 E3 ubiquitin-protein ligase RNF388.4e-0644.44Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        C VC+ DF+ + ++  LPC+HE+H  C+  WLK N+
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

Q8NC42 E3 ubiquitin-protein ligase RNF1495.8e-0758.33Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK
        CAVCI +FKVKDI+  LPC H +H+ CI  WL D++
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNK

Arabidopsis top hitse value%identityAlignment
AT1G35625.1 RING/U-box superfamily protein3.0e-0653.12Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL
        CA+CI D++V +I+  LPC H+YH  CI +WL
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWL

AT3G51325.1 RING/U-box superfamily protein6.0e-0751.61Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTW
        C+VC+M  + KD++ +LPCSHE+H  C+ TW
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTW

AT5G45290.1 RING/U-box superfamily protein3.0e-0641.18Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKD
        C +C+++++  D + TLPC HE+H++C+  WLK+
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKD

AT5G52140.1 RING/U-box superfamily protein1.1e-0854.05Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV
        C++C+M++   D +TTLPC H YH+ CI  WLK NKV
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV

AT5G52150.1 RING/U-box superfamily protein2.4e-0851.35Show/hide
Query:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV
        C++CI D++  D +T LPC H +H+ CI  WLK+NKV
Subjt:  CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGCTGTCTGCATAATGGATTTTAAAGTGAAGGACATTGTGACAACCTTGCCCTGTTCTCACGAATACCATCAAAGCTGCATCTACACTTGGTTAAAGGATAATAAAGT
A
mRNA sequenceShow/hide mRNA sequence
TGTGCTGTCTGCATAATGGATTTTAAAGTGAAGGACATTGTGACAACCTTGCCCTGTTCTCACGAATACCATCAAAGCTGCATCTACACTTGGTTAAAGGATAATAAAGT
A
Protein sequenceShow/hide protein sequence
CAVCIMDFKVKDIVTTLPCSHEYHQSCIYTWLKDNKV