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MS017838 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017838
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING/U-box superfamily protein
Genome locationscaffold373:3081672..3081782
RNA-Seq ExpressionMS017838
SyntenyMS017838
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
GO:0031624 - ubiquitin conjugating enzyme binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO86024.1 Zinc finger, RING-type [Corchorus capsularis]1.2e-0665.71Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
        CV+CKM+Y   D++ TLPC HKYH DCI  WLKDN
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
PNT10973.1 hypothetical protein POPTR_012G136400 [Populus trichocarpa]1.4e-0560Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
        CV+CKM+Y+  D + TLPC H+YH DCI  WL+DN
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
XP_021735447.1 E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa]1.4e-0562.86Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
        CV+C++DY+  D +TTLPC H YH DCI DWLK N
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
XP_021750561.1 E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa]1.4e-0562.86Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
        CV+C++DY+  D +TTLPC H YH DCI DWLK N
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
XP_024437707.1 E3 ubiquitin ligase BIG BROTHER [Populus trichocarpa]1.4e-0560Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
        CV+CKM+Y+  D + TLPC H+YH DCI  WL+DN
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
TrEMBL top hitse value%identityAlignment
A0A0C9S3B2 TSA: Wollemia nobilis Ref_Wollemi_Transcript_30427_1357 transcribed RNA sequence2.3e-0654.05Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        CV+C+++Y+  D++ TLPC H+YH DCI DWLK N +
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
A0A0D6QRW9 RING-type domain-containing protein2.3e-0654.05Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        CV+C+++Y+  D++ TLPC H+YH DCI DWLK N +
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
A0A1R3ITX9 Zinc finger, RING-type6.0e-0765.71Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
        CV+CKM+Y   D++ TLPC HKYH DCI  WLKDN
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
A0A803LRZ0 Uncharacterized protein6.7e-0662.86Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
        CV+C++DY+  D +TTLPC H YH DCI DWLK N
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDN
A0A803MNV9 Uncharacterized protein1.8e-0662.16Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        CV+C++DY+  D +TTLPC H YH DCI DWLK N V
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
SwissProt top hitse value%identityAlignment
Q08DI6 RING finger protein 113.2e-0556.25Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWL
        CV+C MD+   D +  LPC H YH DCI DWL
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWL
Q5QLR5 Probable E3 ubiquitin-protein ligase ZFP14.9e-0645.95Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        C++C+ +YQV + + TL C H+YH DCI  WL   N+
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
Q9LT17 E3 ubiquitin ligase BIG BROTHER-related1.7e-0648.65Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        CV+C++DY+ ++ +  LPC H YH +CI +WLK N V
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
Q9QYK7 RING finger protein 113.2e-0556.25Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWL
        CV+C MD+   D +  LPC H YH DCI DWL
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWL
Q9Y3C5 RING finger protein 113.2e-0556.25Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWL
        CV+C MD+   D +  LPC H YH DCI DWL
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWL
Arabidopsis top hitse value%identityAlignment
AT3G19910.1 RING/U-box superfamily protein1.2e-0748.65Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        CV+C++DY+ ++ +  LPC H YH +CI +WLK N V
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
AT3G60080.1 RING/U-box superfamily protein6.0e-0750Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNN
        C VCK D+ + +    LPC+H YH DCI  WL D+N
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNN
AT5G07225.1 RING/U-box superfamily protein4.1e-0851.35Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        C++C  DY   D +T LPCTHKYH+DCI  WL+++ +
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
AT5G52140.1 RING/U-box superfamily protein8.3e-0956.76Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        C +C M+Y   D +TTLPC H YH+DCI  WLK N V
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
AT5G52150.1 RING/U-box superfamily protein3.2e-0851.35Show/hide
Query:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV
        C +C  DY+  D +T LPC H +H+DCI +WLK+N V
Subjt:  CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGTGTTGTCTGCAAAATGGATTATCAAGTGAATGACATTGTGACTACTTTGCCCTGTACTCACAAATATCATCGAGATTGCATCTACGATTGGTTGAAGGATAACAACGT
A
mRNA sequenceShow/hide mRNA sequence
TGTGTTGTCTGCAAAATGGATTATCAAGTGAATGACATTGTGACTACTTTGCCCTGTACTCACAAATATCATCGAGATTGCATCTACGATTGGTTGAAGGATAACAACGT
A
Protein sequenceShow/hide protein sequence
CVVCKMDYQVNDIVTTLPCTHKYHRDCIYDWLKDNNV