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MS017854 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017854
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCDGSH iron-sulfur domain-containing protein NEET
Genome locationscaffold373:3249701..3250240
RNA-Seq ExpressionMS017854
SyntenyMS017854
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008467263.1 PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo]4.1e-2965.49Show/hide
Query:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK
        MASI+     +++S SS+ +    L   RS    GRRR  VVRAE +  E INPAIRKSE+KVVDSVL+++L+KPLT YCRCW+S TFPLCDGSHVKHNK
Subjt:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK

Query:  ATGDNVGPLLLKK
        ATGDNVGPLLLKK
Subjt:  ATGDNVGPLLLKK

XP_022159571.1 CDGSH iron-sulfur domain-containing protein NEET [Momordica charantia]2.7e-5298.21Show/hide
Query:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKA
        MASIIV IAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCW+SATFPLCDGSHVKHNKA
Subjt:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKA

Query:  TGDNVGPLLLKK
        TGDNVGPLLLKK
Subjt:  TGDNVGPLLLKK

XP_022996357.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]4.1e-2967.29Show/hide
Query:  VAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNV
        +A   + +++ +T   H N     +  G  RRR+ VVRAE G E INPAIRKSEDKVVDSV+++DLAKPLT YCRCW+SATFPLCDGSHVKHNKATGDNV
Subjt:  VAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNV

Query:  GPLLLKK
        GPLLLKK
Subjt:  GPLLLKK

XP_023534172.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]5.4e-2969.61Show/hide
Query:  SVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLL
        + +++ +T   H N     +  G  RRR+ VVRAE G E INPAIRKSEDKVVDSV+++DLAKPLT YCRCW+SATFPLCDGSHVKHNKATGDNVGPLLL
Subjt:  SVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLL

Query:  KK
        KK
Subjt:  KK

XP_038876467.1 CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]3.2e-2966.37Show/hide
Query:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK
        MASI+     S  SI+S    H N        G GRR   VVRA+ +G EPINPAIRK+EDKVVDSVL+++L+KPLT YCRCW+SATFPLCDGSHVKHNK
Subjt:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK

Query:  ATGDNVGPLLLKK
        ATGDNVGPLLLK+
Subjt:  ATGDNVGPLLLKK

TrEMBL top hitse value%identityAlignment
A0A0A0KL88 ZnF_CDGSH domain-containing protein5.8e-2966.67Show/hide
Query:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGA--EPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHN
        MASI+      ++S SS+ +   +L  SR+    GRRR  VVRAE G+  E INPAIRKSEDKVVDSVL+ +L+KPLT YCRCW+S TFPLCDGSHVKHN
Subjt:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGA--EPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHN

Query:  KATGDNVGPLLLKK
        KATGDNVGPLLLKK
Subjt:  KATGDNVGPLLLKK

A0A1S3CTC1 CDGSH iron-sulfur domain-containing protein NEET2.0e-2965.49Show/hide
Query:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK
        MASI+     +++S SS+ +    L   RS    GRRR  VVRAE +  E INPAIRKSE+KVVDSVL+++L+KPLT YCRCW+S TFPLCDGSHVKHNK
Subjt:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK

Query:  ATGDNVGPLLLKK
        ATGDNVGPLLLKK
Subjt:  ATGDNVGPLLLKK

A0A5A7UKN7 CDGSH iron-sulfur domain-containing protein NEET2.0e-2965.49Show/hide
Query:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK
        MASI+     +++S SS+ +    L   RS    GRRR  VVRAE +  E INPAIRKSE+KVVDSVL+++L+KPLT YCRCW+S TFPLCDGSHVKHNK
Subjt:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAE-AGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNK

Query:  ATGDNVGPLLLKK
        ATGDNVGPLLLKK
Subjt:  ATGDNVGPLLLKK

A0A6J1E4B9 CDGSH iron-sulfur domain-containing protein NEET1.3e-5298.21Show/hide
Query:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKA
        MASIIV IAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCW+SATFPLCDGSHVKHNKA
Subjt:  MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKA

Query:  TGDNVGPLLLKK
        TGDNVGPLLLKK
Subjt:  TGDNVGPLLLKK

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET2.0e-2967.29Show/hide
Query:  VAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNV
        +A   + +++ +T   H N     +  G  RRR+ VVRAE G E INPAIRKSEDKVVDSV+++DLAKPLT YCRCW+SATFPLCDGSHVKHNKATGDNV
Subjt:  VAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNV

Query:  GPLLLKK
        GPLLLKK
Subjt:  GPLLLKK

SwissProt top hitse value%identityAlignment
Q05B71 CDGSH iron-sulfur domain-containing protein 28.4e-1761.29Show/hide
Query:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + DL     AYCRCW+S TFP CDGSH KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK

Q6AZG1 CDGSH iron-sulfur domain-containing protein 2B8.4e-1761.29Show/hide
Query:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + DL     AYCRCW+S TFP+CDGSH KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A8.4e-1761.29Show/hide
Query:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + DL     AYCRCW+S TFP+CDGSH KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK

Q7T326 CDGSH iron-sulfur domain-containing protein 24.9e-1759.68Show/hide
Query:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + DL  P   YCRCW+S TFP+CD SH+KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET5.3e-2771.25Show/hide
Query:  GGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK
        G  ++R+ VVRAE G   INP IRK+EDKVVDSV++++L+K +T YCRCW+S TFPLCDGSHVKHNKA GDNVGPLLLKK
Subjt:  GGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding3.7e-2871.25Show/hide
Query:  GGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK
        G  ++R+ VVRAE G   INP IRK+EDKVVDSV++++L+K +T YCRCW+S TFPLCDGSHVKHNKA GDNVGPLLLKK
Subjt:  GGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGATTATTGTGGCCATTGCTGGTTCTGTGGCATCAATATCATCAACACACGCTGCTCACCGGAACTTGTACTCGAGCCGGAGCAGCCGCGGCGGAGGGCGGAG
GCGACTGGCCGTCGTCCGAGCAGAAGCCGGCGCTGAACCCATAAACCCGGCCATCAGGAAGAGCGAGGACAAAGTCGTCGACTCTGTTCTTCTTTCTGACCTTGCCAAGC
CCCTCACTGCCTATTGCAGATGTTGGAAGTCAGCCACTTTTCCTCTGTGTGATGGAAGTCATGTTAAGCACAACAAGGCAACTGGAGATAATGTTGGTCCTTTGCTCTTA
AAGAAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGATTATTGTGGCCATTGCTGGTTCTGTGGCATCAATATCATCAACACACGCTGCTCACCGGAACTTGTACTCGAGCCGGAGCAGCCGCGGCGGAGGGCGGAG
GCGACTGGCCGTCGTCCGAGCAGAAGCCGGCGCTGAACCCATAAACCCGGCCATCAGGAAGAGCGAGGACAAAGTCGTCGACTCTGTTCTTCTTTCTGACCTTGCCAAGC
CCCTCACTGCCTATTGCAGATGTTGGAAGTCAGCCACTTTTCCTCTGTGTGATGGAAGTCATGTTAAGCACAACAAGGCAACTGGAGATAATGTTGGTCCTTTGCTCTTA
AAGAAG
Protein sequenceShow/hide protein sequence
MASIIVAIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSEDKVVDSVLLSDLAKPLTAYCRCWKSATFPLCDGSHVKHNKATGDNVGPLLL
KK