; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017859 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017859
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S20
Genome locationscaffold373:3289947..3291712
RNA-Seq ExpressionMS017859
SyntenyMS017859
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR005729 - Ribosomal protein S10, eukaryotic/archaeal
IPR018268 - Ribosomal protein S10, conserved site
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006421732.1 40S ribosomal protein S20-2 [Citrus clementina]1.0e-5797.52Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEE+QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_010108442.1 40S ribosomal protein S20-2 [Morus notabilis]1.7e-5797.52Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEE QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_011086523.1 40S ribosomal protein S20-2-like [Sesamum indicum]1.7e-5797.52Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_015878354.1 40S ribosomal protein S20-2 [Ziziphus jujuba]3.5e-5898.35Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_022159765.1 40S ribosomal protein S20-2 [Momordica charantia]2.4e-59100Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

TrEMBL top hitse value%identityAlignment
A0A2H5NMF8 Ribosomal_S10 domain-containing protein4.9e-5897.52Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEE+QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A2P5R6Y8 Ribosomal_S10 domain-containing protein8.4e-5897.52Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A6J1DZP4 40S ribosomal protein S20-21.2e-59100Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A6P3ZG25 40S ribosomal protein S20-21.7e-5898.35Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

V4S3T5 Ribosomal_S10 domain-containing protein4.9e-5897.52Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEE+QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

SwissProt top hitse value%identityAlignment
P35686 40S ribosomal protein S203.7e-5084.43Show/hide
Query:  MAYA-AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD
        +AYA  MK+ K G E SQE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSAD
Subjt:  MAYA-AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD

Query:  VVKQITSITIEPGVEVEVTIAD
        VVKQITSITIEPGVEVEVTI+D
Subjt:  VVKQITSITIEPGVEVEVTIAD

P49200 40S ribosomal protein S20-11.1e-5491.67Show/hide
Query:  AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MK  K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

P60866 40S ribosomal protein S201.8e-4170.09Show/hide
Query:  AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q3ZBH8 40S ribosomal protein S201.8e-4170.09Show/hide
Query:  AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q9STY6 40S ribosomal protein S20-22.2e-5591.74Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein7.8e-5691.67Show/hide
Query:  AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MK  K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

AT3G47370.1 Ribosomal protein S10p/S20e family protein1.6e-5691.74Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.2 Ribosomal protein S10p/S20e family protein1.6e-5691.74Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.3 Ribosomal protein S10p/S20e family protein1.6e-5691.74Show/hide
Query:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT5G62300.1 Ribosomal protein S10p/S20e family protein7.8e-5691.67Show/hide
Query:  AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MK  K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAA
GGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTG
GCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAA
CCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAA
GGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTG
GCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAA
CCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT
Protein sequenceShow/hide protein sequence
MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIE
PGVEVEVTIAD