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MS017881 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017881
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold373:3496736..3497023
RNA-Seq ExpressionMS017881
SyntenyMS017881
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]1.1e-0952.5Show/hide
Query:  VVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREE
        VVK+NTD A +T  S + V+ RD  +E VAAM+D     +P L EI AIREGLR+A RLG+ RVM+E+DSL ++ LI ++
Subjt:  VVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREE

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]2.6e-0848.78Show/hide
Query:  GVVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREEN
        GVVK+NTD A +   S + V+ R+  +E V AMVD     +P LA+I AIREGL +A RLG+ RV++ETDSL ++ LI +++
Subjt:  GVVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREEN

XP_023895514.1 uncharacterized protein LOC112007404 [Quercus suber]3.0e-0444.19Show/hide
Query:  PGVVKINTDGACATSS-SSIEVIHRDDRSENVAAMVDVLP-RISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREENL
        PG  KINTDGA    S S I V  RD R   +AA+  +LP   S ++ E  A+++G+ +A+ LG+S V+LE+D+LS I  I E+ L
Subjt:  PGVVKINTDGACATSS-SSIEVIHRDDRSENVAAMVDVLP-RISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREENL

XP_030958390.1 uncharacterized protein LOC115980256 [Quercus lobata]8.8e-0438.64Show/hide
Query:  PGVVKINTDGACAT---SSSSIEVIHRDDRSENVAAMVDVLPRISP-QLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREENL
        PGV K+  DGAC+     SS + V+ RD     + A+  +LP   P +  E+ AI +GL +A  + L +VM+E D+LS+IL I   N+
Subjt:  PGVVKINTDGACAT---SSSSIEVIHRDDRSENVAAMVDVLPRISP-QLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREENL

TrEMBL top hitse value%identityAlignment
A0A6J1DPU1 uncharacterized protein LOC1110224265.2e-1052.5Show/hide
Query:  VVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREE
        VVK+NTD A +T  S + V+ RD  +E VAAM+D     +P L EI AIREGLR+A RLG+ RVM+E+DSL ++ LI ++
Subjt:  VVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREE

A0A6J1DZK3 uncharacterized protein LOC1110249681.3e-0848.78Show/hide
Query:  GVVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREEN
        GVVK+NTD A +   S + V+ R+  +E V AMVD     +P LA+I AIREGL +A RLG+ RV++ETDSL ++ LI +++
Subjt:  GVVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREEN

A0A7N2L6Z9 Reverse transcriptase domain-containing protein2.7e-0641.38Show/hide
Query:  PGVVKINTDGACA---TSSSSIEVIHRDDRSENVAAMVDVLPRISP-QLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREEN
        PGV K+N DGAC+     SS + V+ RD+    +AA+  +LP   P +  E+ AI +GL +A  + L ++MLE+D+LS+IL I   N
Subjt:  PGVVKINTDGACA---TSSSSIEVIHRDDRSENVAAMVDVLPRISP-QLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACCTCCTTCCCTGGTGTGGTGAAGATCAATACAGATGGTGCTTGTGCAACGAGCAGCTCGAGCATAGAGGTTATTCATCGGGATGATAGATCTGAGAATGTAGC
TGCTATGGTGGATGTTCTTCCAAGGATAAGCCCTCAACTTGCTGAAATTGCTGCTATCAGGGAAGGGCTGAGAGTGGCCGTGCGTTTAGGACTTTCTCGTGTGATGCTTG
AGACTGACTCGCTGAGCTCAATCCTTTTGATTCGCGAAGAAAATCTCGTACATAAAGAAGTTCCAAAC
mRNA sequenceShow/hide mRNA sequence
ATGGAGACCTCCTTCCCTGGTGTGGTGAAGATCAATACAGATGGTGCTTGTGCAACGAGCAGCTCGAGCATAGAGGTTATTCATCGGGATGATAGATCTGAGAATGTAGC
TGCTATGGTGGATGTTCTTCCAAGGATAAGCCCTCAACTTGCTGAAATTGCTGCTATCAGGGAAGGGCTGAGAGTGGCCGTGCGTTTAGGACTTTCTCGTGTGATGCTTG
AGACTGACTCGCTGAGCTCAATCCTTTTGATTCGCGAAGAAAATCTCGTACATAAAGAAGTTCCAAAC
Protein sequenceShow/hide protein sequence
METSFPGVVKINTDGACATSSSSIEVIHRDDRSENVAAMVDVLPRISPQLAEIAAIREGLRVAVRLGLSRVMLETDSLSSILLIREENLVHKEVPN