; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017885 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017885
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationscaffold373:3509988..3510077
RNA-Seq ExpressionMS017885
SyntenyMS017885
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]6.1e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
QIS91664.1 RNA polymerase beta subunit [Alberta magna]4.7e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQEKQ+VPARY QEFLTI WEQVH     PL+YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
YP_009236272.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]6.1e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]6.1e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]6.1e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
TrEMBL top hitse value%identityAlignment
A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta3.0e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
A0A218KG28 DNA-directed RNA polymerase subunit beta3.0e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
A0A249RZI0 DNA-directed RNA polymerase subunit beta3.0e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
A0A6H0DRK6 DNA-directed RNA polymerase subunit beta2.3e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQEKQ+VPARY QEFLTI WEQVH     PL+YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
A0A6H0ETN6 DNA-directed RNA polymerase subunit beta3.0e-0474.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
SwissProt top hitse value%identityAlignment
A0A327 DNA-directed RNA polymerase subunit beta1.8e-0671.43Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQEKQ+VPARY QEFLTI WEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
A4GGA5 DNA-directed RNA polymerase subunit beta4.0e-0671.43Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTI WEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
A9LYH7 DNA-directed RNA polymerase subunit beta5.2e-0668.57Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTI WEQ+H     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
Q09X25 DNA-directed RNA polymerase subunit beta3.1e-0670.59Show/hide
Query:  QEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        QE+Q+VPARY QEFLTIEWEQVH     P +YFS
Subjt:  QEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
Q4VZP1 DNA-directed RNA polymerase subunit beta8.0e-0774.29Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+QIVPARY QEFLTIEWEQVH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta2.4e-0665.71Show/hide
Query:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS
        IQE+Q VPARY QEFLTI WE+VH     P +YFS
Subjt:  IQEKQIVPARYSQEFLTIEWEQVH-----PLKYFS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCAGGAAAAACAGATTGTTCCAGCTCGATACAGTCAAGAATTCTTGACTATTGAATGGGAACAAGTTCATCCTTTGAAGTATTTTTCC
mRNA sequenceShow/hide mRNA sequence
ATTCAGGAAAAACAGATTGTTCCAGCTCGATACAGTCAAGAATTCTTGACTATTGAATGGGAACAAGTTCATCCTTTGAAGTATTTTTCC
Protein sequenceShow/hide protein sequence
IQEKQIVPARYSQEFLTIEWEQVHPLKYFS