; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017906 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017906
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S13
Genome locationscaffold373:3686498..3687144
RNA-Seq ExpressionMS017906
SyntenyMS017906
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT75920.1 hypothetical protein VIGAN_01385700 [Vigna angularis var. angularis]1.6e-6797.08Show/hide
Query:  FLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE
        FLV SKGIS+SALPYKRTPPSWLKISS DVD+NICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE
Subjt:  FLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE

Query:  RNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        RNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  RNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

KAG7036084.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]6.2e-6797.76Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022157239.1 40S ribosomal protein S13-like [Momordica charantia]9.6e-6899.25Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata]6.2e-6797.76Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]2.8e-6798.51Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A0A0KMS8 Ribosomal_S13_N domain-containing protein3.0e-6797.76Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A0S3R5T9 Ribosomal_S13_N domain-containing protein8.0e-6897.08Show/hide
Query:  FLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE
        FLV SKGIS+SALPYKRTPPSWLKISS DVD+NICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE
Subjt:  FLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLE

Query:  RNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        RNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  RNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1DVX9 40S ribosomal protein S13-like4.7e-6899.25Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1E411 40S ribosomal protein S13-like3.0e-6797.76Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1HYG9 40S ribosomal protein S13-like3.0e-6797.76Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S139.4e-6693.28Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        + KGIS+SALPY+RT PSWLKISS DVD+ ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER R
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-14.7e-6591.79Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKR+ PSWLK +  DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-21.2e-6592.54Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKR+ PSWLK +S DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P62302 40S ribosomal protein S134.5e-6895.52Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGIS+SALPYKRTPPSWLKISS DV++NICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Q69UI1 40S ribosomal protein S13-25.0e-5984.33Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGIS+SALPYKRTPPSWLK +++DV++ I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYK+TKKLPP WK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S153.3e-6691.79Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKR+ PSWLK +  DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A8.7e-6792.54Show/hide
Query:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR
        R KGISASALPYKR+ PSWLK +S DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNR
Subjt:  RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNR

Query:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTCCTCCATTTTTGGTTCGCAGTAAAGGTATTTCCGCCTCTGCATTACCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTCGATGATAATAT
CTGCAAGTTTGCAAAGAAGGGCTTGACGCCATCTCAGATTGGTGTTATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGCAGTAAAATCTTGCGTA
TTCTTAAAGCCCATGGATTGGCACCAGAGATTCCGGAGGATCTTTATCACTTAATTAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGAC
TCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCAGTTTGGAAA
mRNA sequenceShow/hide mRNA sequence
TTTCCTCCATTTTTGGTTCGCAGTAAAGGTATTTCCGCCTCTGCATTACCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTCGATGATAATAT
CTGCAAGTTTGCAAAGAAGGGCTTGACGCCATCTCAGATTGGTGTTATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGCAGTAAAATCTTGCGTA
TTCTTAAAGCCCATGGATTGGCACCAGAGATTCCGGAGGATCTTTATCACTTAATTAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGAC
TCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCAGTTTGGAAA
Protein sequenceShow/hide protein sequence
FPPFLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWK