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MS017930 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017930
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionlate embryogenesis abundant protein At5g17165-like
Genome locationscaffold373:3881895..3882164
RNA-Seq ExpressionMS017930
SyntenyMS017930
Gene Ontology termsNA
InterPro domainsIPR039291 - Late embryogenesis abundant protein At5g17165-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605657.1 ATP-dependent DNA helicase SRS2-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.9e-1654.95Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP-----SASASKEGSVLDLKAWFRHTALEDLDKDDPL
        +AYEKN E +EVCPTVVPDH++      + +++YWAPHPQTGVFGPP   T ++P     S   +KEGSVL+LK WFRH  LED +K   L
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP-----SASASKEGSVLDLKAWFRHTALEDLDKDDPL

XP_022159632.1 late embryogenesis abundant protein At5g17165-like [Momordica charantia]3.3e-4598.89Show/hide
Query:  SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDKDDPL
        SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALED+DKDDPL
Subjt:  SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDKDDPL

XP_022995249.1 late embryogenesis abundant protein At5g17165-like [Cucurbita maxima]1.1e-1657.3Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP---SASASKEGSVLDLKAWFRHTALEDLDKDDPL
        +AYEKN E +EVCPTVVPDH+I      + +++YWAPHPQTGVFGPP    +  P   SA  +KEGSVL+LK WFRH  LED +K   L
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP---SASASKEGSVLDLKAWFRHTALEDLDKDDPL

XP_023532525.1 late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo]6.5e-1757.14Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP-----SASASKEGSVLDLKAWFRHTALEDLDKDDPL
        +AYEKN E +EVCPTVVPDH+I      + +++YWAPHPQTGVFGPP   T ++P     SA  +KEGSVL+LK WFRH  LED +K   L
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP-----SASASKEGSVLDLKAWFRHTALEDLDKDDPL

XP_038875585.1 late embryogenesis abundant protein At5g17165-like [Benincasa hispida]3.8e-1759.3Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYS----PSASASKEGSVLDLKAWFRHTALEDLDK
        +AYEKN E+Q + PTVVPDHVI HT     ++NYWAPHP+TGVFGPP  H   S     +++  KE SVLD+KAWFRH  LEDL+K
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYS----PSASASKEGSVLDLKAWFRHTALEDLDK

TrEMBL top hitse value%identityAlignment
A0A1S4E6U6 uncharacterized protein LOC1035046941.7e-1555.56Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPP-AHH---TDYSPSASASKEGSVLDLKAWFRHTALEDLDKDDPL
        +AYEKN ED  + PT+VP+ VI H      + NYW PHPQTGVFGPP AHH   T  + +++   EGSVL+LKAWFRH  LEDL+K   L
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPP-AHH---TDYSPSASASKEGSVLDLKAWFRHTALEDLDKDDPL

A0A5A7UIY1 Uncharacterized protein1.0e-1554.95Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYS-----PSASASKEGSVLDLKAWFRHTALEDLDKDDPL
        +AYEKN ED  + PT+VP+ VI H      + NYW PHPQTGVFGPP  H D S      SA  ++ GSVL+LKAWFRH  LEDL+K   L
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYS-----PSASASKEGSVLDLKAWFRHTALEDLDKDDPL

A0A6J1E0C6 late embryogenesis abundant protein At5g17165-like1.6e-4598.89Show/hide
Query:  SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDKDDPL
        SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALED+DKDDPL
Subjt:  SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDKDDPL

A0A6J1H0D3 late embryogenesis abundant protein At5g17165-like3.5e-1659.04Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP-----SASASKEGSVLDLKAWFRHTALE
        +AYEKN E +EVCPTVVPDH+I      + +++YWAPHPQTGVFGPP   T ++P     SA  +KEGSVL+LK WFRH  LE
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP-----SASASKEGSVLDLKAWFRHTALE

A0A6J1K564 late embryogenesis abundant protein At5g17165-like5.4e-1757.3Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP---SASASKEGSVLDLKAWFRHTALEDLDKDDPL
        +AYEKN E +EVCPTVVPDH+I      + +++YWAPHPQTGVFGPP    +  P   SA  +KEGSVL+LK WFRH  LED +K   L
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSP---SASASKEGSVLDLKAWFRHTALEDLDKDDPL

SwissProt top hitse value%identityAlignment
F4KFM8 Late embryogenesis abundant protein At5g171651.2e-1347.56Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDK
        +AY+KN E +E+ P+ VPD +I        +  YW+PHPQTGVFGP +  T+        +E SV++ KAWFR T+LEDLDK
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDK

Arabidopsis top hitse value%identityAlignment
AT3G03150.1 unknown protein3.0e-1245.98Show/hide
Query:  SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSA-SASKEGSVLDLKAWFRHTALEDLDK
        S  ++AY+KN ED E+  + VPD VI        +  YW+PHP+TGVFGP    T++S +A  A ++ +VL+  AWFR T+LED DK
Subjt:  SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSA-SASKEGSVLDLKAWFRHTALEDLDK

AT5G17165.1 unknown protein8.5e-1547.56Show/hide
Query:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDK
        +AY+KN E +E+ P+ VPD +I        +  YW+PHPQTGVFGP +  T+        +E SV++ KAWFR T+LEDLDK
Subjt:  TAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAGCAACAGCAACAGCATATGAGAAGAACACAGAGGATCAGGAAGTGTGCCCAACAGTGGTACCCGACCATGTGATATTCCACACAGAAGCTGCAGCCCAAAACCAAAA
CTACTGGGCGCCGCACCCACAAACTGGAGTATTTGGGCCACCCGCCCACCACACCGACTACTCACCATCGGCTTCGGCTTCCAAGGAGGGCTCGGTTCTGGACCTCAAGG
CTTGGTTCCGCCACACCGCCCTCGAGGACCTCGATAAGGACGACCCACTA
mRNA sequenceShow/hide mRNA sequence
TCAGCAACAGCAACAGCATATGAGAAGAACACAGAGGATCAGGAAGTGTGCCCAACAGTGGTACCCGACCATGTGATATTCCACACAGAAGCTGCAGCCCAAAACCAAAA
CTACTGGGCGCCGCACCCACAAACTGGAGTATTTGGGCCACCCGCCCACCACACCGACTACTCACCATCGGCTTCGGCTTCCAAGGAGGGCTCGGTTCTGGACCTCAAGG
CTTGGTTCCGCCACACCGCCCTCGAGGACCTCGATAAGGACGACCCACTA
Protein sequenceShow/hide protein sequence
SATATAYEKNTEDQEVCPTVVPDHVIFHTEAAAQNQNYWAPHPQTGVFGPPAHHTDYSPSASASKEGSVLDLKAWFRHTALEDLDKDDPL