CuGenDBv2

Gene ID	MS017939
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Replicase polyprotein 1ab
Genome location	scaffold373:3959683..3968642
RNA-Seq Expression	MS017939
Synteny	MS017939
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008467324.1 PREDICTED: uncharacterized protein LOC103504702 [Cucumis melo]

4.1e-119

89.8

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Query:  MIASTALPPWQPPLQAPLRLRR-RP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA
        MIAST LPPWQPPL APLRLRR RP  IP R  +GFVQAYRR  GN+D FGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSS AQS A+RA
Subjt:  MIASTALPPWQPPLQAPLRLRR-RP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA

Query:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
        REIDREF IGLRWRNFTLDFSRNWPRYRRQLNEF+DTPLGKSFVTIFFLWFALSGWLFRFLIF TWILPFAGP+L+GTFANSL+IKG CPACNREFAGYK
Subjt:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK

Query:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        NQIISC+GCGNIVWQPKGQGEYNSRKG+SGSKSQPNVIDVEFEEK
Subjt:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

XP_022159671.1 uncharacterized protein LOC111026015 [Momordica charantia]

1.6e-134

100

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Query:  MIASTALPPWQPPLQAPLRLRRRPSIPLRRVGFVQAYRRGNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDR
        MIASTALPPWQPPLQAPLRLRRRPSIPLRRVGFVQAYRRGNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDR
Subjt:  MIASTALPPWQPPLQAPLRLRRRPSIPLRRVGFVQAYRRGNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDR

Query:  EFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIIS
        EFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIIS
Subjt:  EFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIIS

Query:  CSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        CSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
Subjt:  CSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

XP_022957921.1 uncharacterized protein LOC111459308 [Cucurbita moschata]

2.7e-118

91.43

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Query:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA
        MIAST LPPWQPPL+APLRL R RP  IPLRR VGFVQAYRR  GN+D FGE W+KVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAA+RA
Subjt:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA

Query:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
        REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGK FVTIFFLWFALSGWLFR LIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
Subjt:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK

Query:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        NQIISC+GCGNIVWQPKGQGE  +RKG SGSKSQPNVIDVEFEEK
Subjt:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

XP_023533650.1 uncharacterized protein LOC111795447 [Cucurbita pepo subsp. pepo]

2.3e-117

91.02

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Query:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA
        MIAST LPPWQP L+APLRL R RP  IPLRR VGFVQAYRR  GN+D FGE W+KVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAA+RA
Subjt:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA

Query:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
        REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGK FVTIFFLWFALSGWLFR LIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
Subjt:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK

Query:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        NQIISC+GCGNIVWQPKGQGE  +RKG SGSKSQPNVIDVEFEEK
Subjt:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

XP_038874339.1 uncharacterized protein LOC120067037 [Benincasa hispida]

4.3e-124

93.06

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Query:  MIASTALPPWQPPLQAPLRLRRRPS--IPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA
        MIAST LPPWQPP+QAPLRLRR  S  IP RR +GFVQAYRR  GNSD FGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAA+RA
Subjt:  MIASTALPPWQPPLQAPLRLRRRPS--IPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA

Query:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
        REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIG+FANSL+IKGTCPACNREFAGYK
Subjt:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK

Query:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        NQIISC+GCGNIVWQPKGQGEYNSRKG+SGSKSQPNVIDVEFEEK
Subjt:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPH9 Uncharacterized protein

2.1e-116

86.64

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Query:  MIASTALPPWQPPLQAPLRLRR-RP-SIPLRR-VGFVQAYRR----GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAE
        MIAST LPPWQPPLQAP RLRR RP  IP R  +GFVQAYRR    GN+D FG+AWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRV S AQS A+
Subjt:  MIASTALPPWQPPLQAPLRLRR-RP-SIPLRR-VGFVQAYRR----GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAE

Query:  RAREIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAG
        RAREIDREF IG+RWRNFTLDFSRNWPRYRRQLNEF+DTPLGKS VTIFFLWFALSGWLFRFLIF TWILPFAGP+LIGTFANSL+IKG CPACNREFAG
Subjt:  RAREIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAG

Query:  YKNQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        YKNQIISC+GCGN+VWQPK  GEYNSRKG+SGSKSQPNVIDVEFEEK
Subjt:  YKNQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

A0A1S3CT98 uncharacterized protein LOC103504702

2.0e-119

89.8

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Query:  MIASTALPPWQPPLQAPLRLRR-RP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA
        MIAST LPPWQPPL APLRLRR RP  IP R  +GFVQAYRR  GN+D FGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSS AQS A+RA
Subjt:  MIASTALPPWQPPLQAPLRLRR-RP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA

Query:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
        REIDREF IGLRWRNFTLDFSRNWPRYRRQLNEF+DTPLGKSFVTIFFLWFALSGWLFRFLIF TWILPFAGP+L+GTFANSL+IKG CPACNREFAGYK
Subjt:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK

Query:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        NQIISC+GCGNIVWQPKGQGEYNSRKG+SGSKSQPNVIDVEFEEK
Subjt:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

A0A6J1E4L9 uncharacterized protein LOC111026015

7.6e-135

100

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Query:  MIASTALPPWQPPLQAPLRLRRRPSIPLRRVGFVQAYRRGNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDR
        MIASTALPPWQPPLQAPLRLRRRPSIPLRRVGFVQAYRRGNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDR
Subjt:  MIASTALPPWQPPLQAPLRLRRRPSIPLRRVGFVQAYRRGNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDR

Query:  EFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIIS
        EFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIIS
Subjt:  EFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIIS

Query:  CSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        CSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
Subjt:  CSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

A0A6J1H0K1 uncharacterized protein LOC111459308

1.3e-118

91.43

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Query:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA
        MIAST LPPWQPPL+APLRL R RP  IPLRR VGFVQAYRR  GN+D FGE W+KVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAA+RA
Subjt:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA

Query:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
        REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGK FVTIFFLWFALSGWLFR LIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
Subjt:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK

Query:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        NQIISC+GCGNIVWQPKGQGE  +RKG SGSKSQPNVIDVEFEEK
Subjt:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

A0A6J1K7K5 uncharacterized protein LOC111491357

2.5e-117

90.61

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Query:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA
        MIAST LPPWQP L+APLRL R RP  IPLRR VGFVQAYRR  GN+D FGE W+KVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAA+RA
Subjt:  MIASTALPPWQPPLQAPLRL-RRRP-SIPLRR-VGFVQAYRR--GNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERA

Query:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
        REIDREFGIGLRWRNFTLDFSRNWPRYRRQLN+FMDTPLGK FVTIFFLWFALSGWLFR LIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK
Subjt:  REIDREFGIGLRWRNFTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYK

Query:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK
        NQIISC+GCGNIVWQPKGQGE  +RKG SGSKSQPNVIDVEFEEK
Subjt:  NQIISCSGCGNIVWQPKGQGEYNSRKGNSGSKSQPNVIDVEFEEK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G44870.1 unknown protein

4.3e-74

61.71

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Query:  VQAYRRGNSDDF------GEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDREFGIGLRWRNFTLDFSRNWPRYRRQLN
        V+A++RG+ D        G+AW   WR ANDGFE+FVFEA+KTAER+DR+Y+VSRR SS A SAA+RAREIDREFGI  R R  + DFSRN+P+YR+Q +
Subjt:  VQAYRRGNSDDF------GEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDREFGIGLRWRNFTLDFSRNWPRYRRQLN

Query:  EFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIISCSGCGNIVWQPKG---------QGEYN
         F++TPLG SF TIFFLWFALSGWLFR +I ATW+LP AGPLLIG  AN+ +IKG CPAC R+F GYKNQII C GCGNIVWQP+G             N
Subjt:  EFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIISCSGCGNIVWQPKG---------QGEYN

Query:  SRKGNSGSKSQPNVIDVEFEEK
        + KGNS    +  +IDV+FEEK
Subjt:  SRKGNSGSKSQPNVIDVEFEEK

Sequences

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CDS sequence

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ATGATAGCTTCAACAGCTCTGCCGCCATGGCAGCCACCGCTTCAAGCTCCGTTAAGGCTGAGGAGGAGGCCCTCAATCCCTCTGCGGAGGGTTGGCTTCGTTCAGGCGTA
CCGTCGCGGGAACAGCGATGATTTTGGCGAGGCCTGGAATAAAGTGTGGCGAGGCGCCAACGATGGTTTCGAGAAATTCGTATTCGAGGCGAGGAAAACCGCGGAGCGCC
TCGACAGGCGCTACTCTGTATCGCGCCGTGTTAGTTCTGTTGCCCAATCAGCGGCCGAGCGGGCGCGCGAGATTGATAGGGAGTTCGGGATTGGATTGCGTTGGCGTAAT
TTTACATTGGATTTTAGCAGAAATTGGCCAAGGTATAGGAGGCAACTCAATGAATTTATGGACACGCCATTAGGGAAAAGTTTTGTGACAATATTCTTCCTTTGGTTTGC
ATTATCTGGATGGCTTTTCCGATTCTTAATATTTGCAACGTGGATACTACCTTTTGCCGGTCCACTTCTCATTGGGACTTTTGCCAATAGCCTTATAATAAAGGGTACTT
GTCCTGCCTGTAATAGGGAATTTGCTGGGTACAAGAACCAAATTATTTCCTGCAGTGGCTGTGGAAACATAGTGTGGCAGCCTAAAGGCCAAGGGGAATACAATTCAAGA
AAAGGTAATTCTGGTTCTAAGTCACAACCCAATGTTATTGACGTGGAGTTTGAGGAGAAA

mRNA sequence

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Protein sequence

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MIASTALPPWQPPLQAPLRLRRRPSIPLRRVGFVQAYRRGNSDDFGEAWNKVWRGANDGFEKFVFEARKTAERLDRRYSVSRRVSSVAQSAAERAREIDREFGIGLRWRN
FTLDFSRNWPRYRRQLNEFMDTPLGKSFVTIFFLWFALSGWLFRFLIFATWILPFAGPLLIGTFANSLIIKGTCPACNREFAGYKNQIISCSGCGNIVWQPKGQGEYNSR
KGNSGSKSQPNVIDVEFEEK

MS017939 (gene) of Bitter gourd (TR) v1 genome