; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017941 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017941
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionU6 snRNA phosphodiesterase
Genome locationscaffold373:3978093..3980874
RNA-Seq ExpressionMS017941
SyntenyMS017941
Gene Ontology termsGO:0034477 - U6 snRNA 3'-end processing (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990838 - poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends (molecular function)
InterPro domainsIPR027521 - U6 snRNA phosphodiesterase Usb1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008467330.1 PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]1.6e-11476.47Show/hide
Query:  MDALKASYRGSSSDEEDDIV-----STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL
        MDAL+ASY GSSSDEE D V     ST+ P           LPPPPLSLL+FPNS   L DLP  Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV L
Subjt:  MDALKASYRGSSSDEEDDIV-----STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL

Query:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL
        F+KK+SSLVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKWETFVNDDLSRTFLSMEII GGL
Subjt:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL

Query:  MEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        MEIRKQIQVVNEVYKLHNLPEFYKE RPHISLAWALGD+S++ S+ V +++KRS++  P KRCIFTTKF+GIECKIGKK YKICK  DE
Subjt:  MEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE

XP_022155865.1 U6 snRNA phosphodiesterase [Momordica charantia]3.7e-15198.59Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKV
        MDALKASYRGSSSDEEDDIVSTAP DLS PPPPPPSLPPPPLSLLDFPNSISALHDLP AQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKV
Subjt:  MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKV

Query:  SSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK
        SSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK
Subjt:  SSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK

Query:  QIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        QIQVVNEVYK HNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
Subjt:  QIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE

XP_022969741.1 U6 snRNA phosphodiesterase [Cucurbita maxima]6.2e-11475.76Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAP-------------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPT
        M+AL ASY GSSSDE+ D VS +              P LS        LPPPPLSLLDFPNS SAL DLP  Q  R RSFPHV+GNYA+H+YIPVYIPT
Subjt:  MDALKASYRGSSSDEEDDIVSTAP-------------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPT

Query:  TSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLS
         ++KEV LFLKK+S LVP+LHLVDID+PL  LCKD+ KLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLS
Subjt:  TSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLS

Query:  MEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        MEIIAGGLMEIRK+IQVVNEVYKLHNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+S +   SKRCIFT KF+GIECKIGKK +KICK PDE
Subjt:  MEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE

XP_023549871.1 U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo]2.5e-11577.13Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAP---------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKK
        M+AL ASY GSSSDE+ D VS +          P LS        LPPPPLSLLDFPNS SAL DLP  Q  R RSFPHV+GNYA+H+YIPVYIPT ++K
Subjt:  MDALKASYRGSSSDEEDDIVSTAP---------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKK

Query:  EVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEII
        EV LFLKK+S LVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEII
Subjt:  EVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEII

Query:  AGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        AGGLMEIRK IQVVNEVYKLHNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+S +   SKRCIFT KF+GIECKIGKK +KICK PDE
Subjt:  AGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE

XP_038875354.1 U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]4.3e-11577.66Show/hide
Query:  MDALKASYRGSSSDEEDDIV-------STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV
        MDAL+ASY GSSSDEE D V       S + P LS        LPPP  SLL FPNS S L DLP  Q TR RSFPHV+GNYALH+YIPVY+PT  +KEV
Subjt:  MDALKASYRGSSSDEEDDIV-------STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV

Query:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
         LFLKKVSSLVP+LHLVDIDVPL  LCKD+HKLEQALAREFH+SLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEII G
Subjt:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG

Query:  GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSS-MAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        GLMEIRKQIQ+VNEVYKLHNLPEFYKE RPHISLAWA+GDLSKLLS+ V ++MK S+ M   KRCIFTTKF GIECKIGKK YKICK PDE
Subjt:  GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSS-MAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE

TrEMBL top hitse value%identityAlignment
A0A0A0KPH5 U6 snRNA phosphodiesterase8.7e-11476.29Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPS-------LPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV
        MDAL+ASY GSSSDEE D VS  PP  S   P           LPPPPLSLL+FPNS   L DLP  Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV
Subjt:  MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPS-------LPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV

Query:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
         LF+KK+SSLVP+LHLVDID+PL  LCKD+ KLEQA AREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKWETFVNDDLSRTFLSMEII G
Subjt:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG

Query:  GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        GLMEIRKQIQVVNEVYKLHNLPEFYKE RPHIS+AWALGD+S+L S+ V +++KRS++  P KRCIFTTKF+GIECKIGKK YKICK PDE
Subjt:  GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE

A0A1S3CTB0 U6 snRNA phosphodiesterase7.9e-11576.47Show/hide
Query:  MDALKASYRGSSSDEEDDIV-----STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL
        MDAL+ASY GSSSDEE D V     ST+ P           LPPPPLSLL+FPNS   L DLP  Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV L
Subjt:  MDALKASYRGSSSDEEDDIV-----STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVL

Query:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL
        F+KK+SSLVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKWETFVNDDLSRTFLSMEII GGL
Subjt:  FLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGL

Query:  MEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        MEIRKQIQVVNEVYKLHNLPEFYKE RPHISLAWALGD+S++ S+ V +++KRS++  P KRCIFTTKF+GIECKIGKK YKICK  DE
Subjt:  MEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE

A0A6J1DNL4 U6 snRNA phosphodiesterase1.8e-15198.59Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKV
        MDALKASYRGSSSDEEDDIVSTAP DLS PPPPPPSLPPPPLSLLDFPNSISALHDLP AQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKV
Subjt:  MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKV

Query:  SSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK
        SSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK
Subjt:  SSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK

Query:  QIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        QIQVVNEVYK HNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
Subjt:  QIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE

A0A6J1EQH7 U6 snRNA phosphodiesterase3.9e-11477.32Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAP-------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV
        M+AL ASY GSSSDE+ D VS +        P LS        LPPPPLSLLDFPNS SAL DLP  Q  R RSFPHV+GNYALH+YIPVYI T ++KEV
Subjt:  MDALKASYRGSSSDEEDDIVSTAP-------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEV

Query:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
         LFLKK+S LVP+LHLVDID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLSMEIIAG
Subjt:  VLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG

Query:  GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        GLMEIRK IQVVNEVYKLHNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+S +   SKR IFT KF+GIECKIGKK +KICK PDE
Subjt:  GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE

A0A6J1HYN3 U6 snRNA phosphodiesterase3.0e-11475.76Show/hide
Query:  MDALKASYRGSSSDEEDDIVSTAP-------------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPT
        M+AL ASY GSSSDE+ D VS +              P LS        LPPPPLSLLDFPNS SAL DLP  Q  R RSFPHV+GNYA+H+YIPVYIPT
Subjt:  MDALKASYRGSSSDEEDDIVSTAP-------------PDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPT

Query:  TSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLS
         ++KEV LFLKK+S LVP+LHLVDID+PL  LCKD+ KLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKWETFVNDDLSRTFLS
Subjt:  TSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLS

Query:  MEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE
        MEIIAGGLMEIRK+IQVVNEVYKLHNLPEFYKE RPHISLAWALGDLSKLLS+ V D+MK+S +   SKRCIFT KF+GIECKIGKK +KICK PDE
Subjt:  MEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE

SwissProt top hitse value%identityAlignment
Q5I0I5 U6 snRNA phosphodiesterase5.8e-1425.36Show/hide
Query:  SSSDEEDDIVSTAPPDLSP---------PPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
        SSS  ED+  + A     P          P P    P P   L  FP++     D       R R+FPH  GN+A H+YIP       +  + + L +  
Subjt:  SSSDEEDDIVSTAPPDLSP---------PPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS

Query:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
           P L  ++                     EFH+SLS++V +R H I   V +L+ ++   +R++   ++ + + N + +RTF+ +E ++ G  +    
Subjt:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ

Query:  IQVVNEVYKLHNLPEFYKEERPHISLAWALGD------------LSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECK
        +  V+ V K  +L  FY++   H+SLAW +GD            L +++    D +M    +A   RC    KF  +  K
Subjt:  IQVVNEVYKLHNLPEFYKEERPHISLAWALGD------------LSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECK

Q6DEF6 U6 snRNA phosphodiesterase3.6e-1633.17Show/hide
Query:  PSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREF
        P LP P      F +S     D       R RSF H  GN+A +V+ P Y P  +  EV   L K+ +   +      D+PLT            ++ EF
Subjt:  PSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREF

Query:  HISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG--GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALG
        H+SLS+TV +R H I   V  +R  L   ++++    K + + N + +RTFL ME+  G   L+E+ K   +V+E  K  NL  FY++   HISLAW +G
Subjt:  HISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG--GLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALG

Query:  DLSKLLSR
        D ++ L +
Subjt:  DLSKLLSR

Q7ZYI9 U6 snRNA phosphodiesterase5.1e-1829.6Show/hide
Query:  SSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLP--NAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHL
        SS EED+  ++ PP    PP PPP+      ++L     +    DL        R RSF H  GN+A +VYIP                      P    
Subjt:  SSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLP--NAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHL

Query:  VDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVY
        +D+   L S+  +   L   ++ EFHIS S+TV +R H I+  V  L+ KL C  R+     + + + N + +RTFL +E ++ G+  + + +  V+   
Subjt:  VDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVY

Query:  KLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCI-------FTTKFSG--IECKIGKKTYKI
        +  NL  FY+E   H+SLAW +GD          +K+K S +   ++ I         T+F+   I CK G KT+ I
Subjt:  KLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCI-------FTTKFSG--IECKIGKKTYKI

Q91W78 U6 snRNA phosphodiesterase2.3e-1526.43Show/hide
Query:  SSSDEEDDIVSTAPPDLSP---------PPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS
        SSS  ED+  + A     P          P P   LP P   L  FP++     D       R R+FPH  GN+A H+YIP       +  +   L +  
Subjt:  SSSDEEDDIVSTAPPDLSP---------PPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVS

Query:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ
          VP L L++                     EFH+SLS++V +R H I   V +L+ ++   +R++   ++ + + N + +RTF+ +E ++ G  +    
Subjt:  SLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQ

Query:  IQVVNEVYKLHNLPEFYKEERPHISLAWALGD------------LSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECK
        +  V+   K  +L  FY++   HISLAW +GD            L +++    D +M    +A   RC    KF  +  K
Subjt:  IQVVNEVYKLHNLPEFYKEERPHISLAWALGD------------LSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECK

Q9BQ65 U6 snRNA phosphodiesterase6.4e-1327.88Show/hide
Query:  SSDEEDDIVSTAPPDLS----PPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSL
        S DE +D + T P D S      P P    P P   L  FP +     D       R R+FPH  GN+A HVY+P          + + L    + VP L
Subjt:  SSDEEDDIVSTAPPDLS----PPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSL

Query:  HLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNE
          + +                     FH+SLS++V +R H I   V  L+ ++    R++   ++ + + N + +RTF+ +E+ +G   +    +  V+ 
Subjt:  HLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNE

Query:  VYKLHNLPEFYKEERPHISLAWALGD
        V +  NL  FY++   H+SLAW +GD
Subjt:  VYKLHNLPEFYKEERPHISLAWALGD

Arabidopsis top hitse value%identityAlignment
AT5G51170.1 unknown protein2.1e-8860.35Show/hide
Query:  MDALKASYRGSSSDEE-DDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKK
        M+AL+ASY  SSSD + DD+   +P   +       SLPPPPL+LLD   S  +L         R R+FPHV+GNYALHVY+PV IP   KKE+V FLKK
Subjt:  MDALKASYRGSSSDEE-DDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKK

Query:  VSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIR
        V+S+VP LHLV+ DVPL+ LCKD+ K E+AL REFHISL R VP+RVHQI+S++SMLRQKLQ Q+RY IDF+KWE FVNDD +R+FLS+EI   GL EI 
Subjt:  VSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIR

Query:  KQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPS-KRCIFTTKFSGIECKIGKKTYKICKSPDE
        KQI  VNEVYKLHNLPEFYK+ RPHISL WALGD+   L   VD ++++       +  IFT+KF GIECKIG KT+KICK PDE
Subjt:  KQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPS-KRCIFTTKFSGIECKIGKKTYKICKSPDE

AT5G51170.2 unknown protein2.5e-5757.28Show/hide
Query:  MDALKASYRGSSSDEE-DDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKK
        M+AL+ASY  SSSD + DD+   +P   +       SLPPPPL+LLD   S  +L         R R+FPHV+GNYALHVY+PV IP   KKE+V FLKK
Subjt:  MDALKASYRGSSSDEE-DDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKK

Query:  VSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIR
        V+S+VP LHLV+ DVPL+ LCKD+ K E+AL REFHISL R VP+RVHQI+S++SMLRQKLQ Q+RY IDF+KWE FVNDD +R+FLS+EI   GL E+ 
Subjt:  VSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIR

Query:  KQIQVV
         ++ ++
Subjt:  KQIQVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTCTGAAGGCCTCGTATAGAGGCAGCTCGTCGGATGAAGAAGACGACATAGTCTCAACTGCACCGCCAGACTTGTCGCCGCCGCCGCCGCCGCCTCCGTCTCT
GCCACCGCCGCCTCTCTCGCTTCTCGATTTTCCCAATTCCATCTCCGCGTTACATGACTTACCAAATGCTCAGCCCACTAGATTTCGGAGCTTCCCTCATGTTGAAGGAA
ACTATGCCCTACACGTCTATATTCCAGTTTATATACCAACTACATCAAAGAAGGAGGTGGTCCTGTTTTTGAAGAAAGTCTCCTCACTTGTGCCCTCTCTCCATCTTGTT
GATATTGACGTTCCTTTGACCTCTTTATGCAAAGATGAGCACAAGCTTGAGCAAGCCTTGGCCAGAGAATTTCACATAAGTTTATCAAGAACAGTGCCAATCCGAGTGCA
CCAGATTGACTCAATAGTGTCAATGCTTCGTCAGAAGCTTCAGTGTCAAAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGACTTTTGTTAATGATGACCTCTCTCGGA
CCTTCCTGTCAATGGAAATTATCGCTGGAGGGCTAATGGAGATAAGAAAACAGATTCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAA
GAGAGGCCACATATATCCTTAGCCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCGTGTAGTTGACGACAAAATGAAGAGGTCCTCCATGGCACCATCAAAGAGATG
TATTTTCACCACTAAATTCAGTGGCATTGAATGTAAGATTGGTAAAAAAACGTATAAAATATGTAAATCTCCAGATGAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTCTGAAGGCCTCGTATAGAGGCAGCTCGTCGGATGAAGAAGACGACATAGTCTCAACTGCACCGCCAGACTTGTCGCCGCCGCCGCCGCCGCCTCCGTCTCT
GCCACCGCCGCCTCTCTCGCTTCTCGATTTTCCCAATTCCATCTCCGCGTTACATGACTTACCAAATGCTCAGCCCACTAGATTTCGGAGCTTCCCTCATGTTGAAGGAA
ACTATGCCCTACACGTCTATATTCCAGTTTATATACCAACTACATCAAAGAAGGAGGTGGTCCTGTTTTTGAAGAAAGTCTCCTCACTTGTGCCCTCTCTCCATCTTGTT
GATATTGACGTTCCTTTGACCTCTTTATGCAAAGATGAGCACAAGCTTGAGCAAGCCTTGGCCAGAGAATTTCACATAAGTTTATCAAGAACAGTGCCAATCCGAGTGCA
CCAGATTGACTCAATAGTGTCAATGCTTCGTCAGAAGCTTCAGTGTCAAAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGACTTTTGTTAATGATGACCTCTCTCGGA
CCTTCCTGTCAATGGAAATTATCGCTGGAGGGCTAATGGAGATAAGAAAACAGATTCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAA
GAGAGGCCACATATATCCTTAGCCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCGTGTAGTTGACGACAAAATGAAGAGGTCCTCCATGGCACCATCAAAGAGATG
TATTTTCACCACTAAATTCAGTGGCATTGAATGTAAGATTGGTAAAAAAACGTATAAAATATGTAAATCTCCAGATGAA
Protein sequenceShow/hide protein sequence
MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLV
DIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKE
ERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE