; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS017975 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS017975
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionYqgFc domain-containing protein
Genome locationscaffold373:4352225..4354106
RNA-Seq ExpressionMS017975
SyntenyMS017975
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159849.1 uncharacterized protein LOC111026145 [Momordica charantia]2.6e-8898.8Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYVKPLN+FRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDY+NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

XP_022957830.1 uncharacterized protein LOC111459253 [Cucurbita moschata]1.0e-7989.76Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYV+PLNLFRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MHLMA D QRLISELSL+GFIVGYPFD QRRNADAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQGYLD++NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

XP_022995255.1 uncharacterized protein LOC111490857 [Cucurbita maxima]1.0e-7989.76Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYV+PLNLFRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MHLMA D QRLISELSL+GFIVGYPFD QRRNADAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQGYLD++NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

XP_023533829.1 uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo]4.9e-7989.16Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYV+PLNLFRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MHLMA D QRLISELSL+GFIVGYPFD QRRNADAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQ YLD++NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

XP_038875331.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]6.7e-7686.14Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYVKPLNLFRDLL RN LE GR LGLDVGDKYVGLAVSDPDN IASPLSVL+RKKTKMHLMA D +RLIS+ SLAGFIVGYP  R RRN DAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        D+LCKTG LE VKYTFWDECFTSKNVELLIKPL+LPP+LSKT++DKFAAVGILQGYLDY+NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein5.7e-7383.13Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYV+PL LFRDL  R+ LE GR LGLDVGDKYVGLAVSDPDN IA PLSVLLRKKT M LMA+D Q++ISE SLAGFIVGYPFDR R N DA+QVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL L P +SKTI+DKFAAVGILQGYLDY+NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

A0A1S3ATQ4 putative pre-16S rRNA nuclease isoform X12.9e-6980.12Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYVKP  LFRDLL R+ L+  R LGLDVGDKYVGLAVSDPDN IASPLSVLLRKK  M LMA D Q+LISE SLAGFIVGYPFDR R+N +A+QVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTG LEGVKYTFWDE FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLDY+NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

A0A6J1E3H7 uncharacterized protein LOC1110261451.3e-8898.8Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYVKPLN+FRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDY+NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

A0A6J1H0B7 uncharacterized protein LOC1114592534.8e-8089.76Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYV+PLNLFRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MHLMA D QRLISELSL+GFIVGYPFD QRRNADAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQGYLD++NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

A0A6J1K3L4 uncharacterized protein LOC1114908574.8e-8089.76Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYV+PLNLFRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MHLMA D QRLISELSL+GFIVGYPFD QRRNADAVQVKIFI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQGYLD++NRRPEL
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL

SwissProt top hitse value%identityAlignment
A4XKC6 Putative pre-16S rRNA nuclease2.2e-1332.88Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLC-------KTGTLEGVKYT
        R L LD+G + +G+A+SDP  + A P  VL  +K  ++     L ++ +E  +   ++GYP  +   +  A +    ID++C       K G ++     
Subjt:  RFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLC-------KTGTLEGVKYT

Query:  FWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYN
         WDE F++K VE +++   +     K +VDK AAV ILQGYLD+ N
Subjt:  FWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYN

B6IN25 Putative pre-16S rRNA nuclease8.4e-1334.29Show/hide
Query:  GRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQ-VKIFIDDLCKTGTLEGV--KYTFWD
        GR +GLD+G+K +GLAVSDP   +ASP+  +  ++TK    A++L R + +  +   +VG P +         Q V+ F   L +   L G   +  FWD
Subjt:  GRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQ-VKIFIDDLCKTGTLEGV--KYTFWD

Query:  ECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLD
        E  ++  VE ++   ++       +VDK AA  ILQG LD
Subjt:  ECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLD

B9MRK7 Putative pre-16S rRNA nuclease5.2e-1535.71Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNLIASP-LSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDECF
        R L LD+G+  VG+A+SDP  + A P +++ LR K     +  +L ++    ++   ++GYP  +   +    ++K   +   K G+   V+   WDE F
Subjt:  RFLGLDVGDKYVGLAVSDPDNLIASP-LSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDECF

Query:  TSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYN
        ++K VE +I   EL     K I+DK AAV ILQGYLD+YN
Subjt:  TSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYN

C4Z578 Putative pre-16S rRNA nuclease8.4e-1330.66Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKK-TKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDECF
        R +GLDVG K VG+A+SDP  + A P   + RK+  K+      ++++ISE  +   +VGYP  +   +    + K   +         G+  T WDE  
Subjt:  RFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKK-TKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDECF

Query:  TSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLD
        T+   + +++   +     KT++D+ AAV IL+GY++
Subjt:  TSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLD

Q3AEN4 Putative pre-16S rRNA nuclease4.9e-1334.04Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQ-RRNADAVQVKIFIDDLCKTGTLEGVKYTFWDECF
        + LGLDVGDK +G+A+SD   L A  L+V+ R   K  L   +++++I    +   ++GYP +        A  VK F  +L K     G+K  FWDE  
Subjt:  RFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQ-RRNADAVQVKIFIDDLCKTGTLEGVKYTFWDECF

Query:  TSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNR
        ++   E L+   ++     K ++DK AA  IL GYL+Y ++
Subjt:  TSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNR

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.7e-5059.26Show/hide
Query:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI
        MKYVKPL+L  + L       GRFLGLDVGDKYVGLA+SDP N++ASPLSVLLRKK+ + LMA D Q L+   S++G +VGYPF +     D V V +FI
Subjt:  MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFI

Query:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNR
        ++L KT  L+ VKYT+WDE  +SK VEL++KPL L PV  KT++DK AAV ILQ YLDY NR
Subjt:  DDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTACGTGAAGCCCTTGAACTTGTTCCGTGATTTATTGACGAGAAATCCCCTCGAACGTGGGCGTTTTCTCGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGC
AGTCTCCGACCCAGATAATTTAATTGCCTCACCTCTTAGTGTTTTGCTCAGGAAGAAAACAAAGATGCATTTGATGGCTCGGGATTTGCAGAGATTAATTTCTGAACTTT
CTCTGGCGGGGTTCATTGTTGGGTACCCTTTTGATAGACAACGACGCAACGCGGATGCTGTGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAACACTTGAA
GGCGTCAAATATACGTTTTGGGACGAGTGCTTTACATCAAAGAACGTGGAACTACTGATAAAGCCATTGGAACTGCCACCCGTTTTGTCGAAGACAATAGTTGACAAGTT
TGCTGCTGTTGGAATACTTCAGGGTTACCTAGATTATTATAACAGAAGACCAGAATTG
mRNA sequenceShow/hide mRNA sequence
ATGAAGTACGTGAAGCCCTTGAACTTGTTCCGTGATTTATTGACGAGAAATCCCCTCGAACGTGGGCGTTTTCTCGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGC
AGTCTCCGACCCAGATAATTTAATTGCCTCACCTCTTAGTGTTTTGCTCAGGAAGAAAACAAAGATGCATTTGATGGCTCGGGATTTGCAGAGATTAATTTCTGAACTTT
CTCTGGCGGGGTTCATTGTTGGGTACCCTTTTGATAGACAACGACGCAACGCGGATGCTGTGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAACACTTGAA
GGCGTCAAATATACGTTTTGGGACGAGTGCTTTACATCAAAGAACGTGGAACTACTGATAAAGCCATTGGAACTGCCACCCGTTTTGTCGAAGACAATAGTTGACAAGTT
TGCTGCTGTTGGAATACTTCAGGGTTACCTAGATTATTATAACAGAAGACCAGAATTG
Protein sequenceShow/hide protein sequence
MKYVKPLNLFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLE
GVKYTFWDECFTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYYNRRPEL