; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018035 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018035
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf4
Genome locationscaffold1336:72917..73189
RNA-Seq ExpressionMS018035
SyntenyMS018035
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003359 - Photosystem I Ycf4, assembly


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AWX63884.1 photosystem I assembly protein ycf4 [Bretschneidera sinensis]3.3e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
YP_009236291.1 photosystem I assembly protein ycf4 [Gynostemma pentaphyllum]3.3e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
YP_009752592.1 photosystem I assembly protein Ycf4 [Trichosanthes homophylla]3.3e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
YP_009752677.1 photosystem I assembly protein Ycf4 [Ampelosycios humblotii]3.3e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
YP_010022317.1 photosystem I assembly protein Ycf4 [Elaeocarpus japonicus]3.3e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
TrEMBL top hitse value%identityAlignment
A0A120L1N9 Photosystem I assembly protein Ycf41.6e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
A0A346QNJ0 Photosystem I assembly protein Ycf41.6e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
A0A6H0ESZ3 Photosystem I assembly protein Ycf41.6e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
A0A6H0ET70 Photosystem I assembly protein Ycf41.6e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
A0A6M3RTZ8 Photosystem I assembly protein Ycf41.6e-4598.9Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
SwissProt top hitse value%identityAlignment
A0ZZ46 Photosystem I assembly protein Ycf41.7e-4796.7Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Q09G35 Photosystem I assembly protein Ycf44.1e-4694.51Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRF MKDIQSIRIEVKEG+Y RRVLYMEIRGQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Q09X06 Photosystem I assembly protein Ycf44.1e-4695.6Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFD KEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQG+IPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Q2L913 Photosystem I assembly protein Ycf41.7e-4796.7Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGA+PLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Q9MTL1 Photosystem I assembly protein Ycf42.4e-4695.6Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFISSYLWCTI WNVGSGYDRFDRKEGI+CIFRWGFPGKNRRIFLRF MKDIQSIRIEVKEGIYARRVLYMEI+GQGAIPLTR
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
Arabidopsis top hitse value%identityAlignment
ATCG00520.1 unfolded protein binding1.5e-4390.11Show/hide
Query:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR
        MSFYGIAGLFIS YLWCTILWNVGSGYD FDRKEGI+ IFRWGFPGK+RRIFLRF MKDIQSIRIEVKEG+ ARRVLYMEIRGQGAIPL R
Subjt:  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGGAATAAT
GTGTATTTTCCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCAC
GTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGT
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTCTATGGGATCGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGAATGTAGGTAGCGGTTATGATCGATTCGATAGAAAAGAAGGAATAAT
GTGTATTTTCCGTTGGGGGTTTCCTGGAAAAAATCGTCGAATCTTCCTCCGATTCCTTATGAAAGACATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCAC
GTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGT
Protein sequenceShow/hide protein sequence
MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIMCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYMEIRGQGAIPLTR