CuGenDBv2

Gene ID	MS018037
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein S12
Genome location	scaffold1336:94540..94671
RNA-Seq Expression	MS018037
Synteny	MS018037
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AAK92224.2 ribosomal protein S12 [Pisum sativum]

1.5e-14

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

AXS77405.1 ribosomal protein S12 [Fallopia multiflora]

1.5e-14

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

QWX88123.1 ribosomal protein S12 [Indigofera tinctoria]

1.5e-14

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

YP_007516865.1 ribosomal protein S12 [Glycine max]

1.5e-14

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

YP_009676233.1 ribosomal protein S12 [Camellia sinensis]

1.5e-14

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

TrEMBL top hits

e value

%identity

Alignment

A0A0M4RVQ0 Ribosomal protein S12

7.2e-15

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

A0A6C0M8Z1 Ribosomal protein S12

7.2e-15

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

A0A6C0M9Y2 Ribosomal protein S12

7.2e-15

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

Q7YEU1 Ribosomal protein S12

7.2e-15

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

Q9XPB3 Rps12

7.2e-15

100

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

SwissProt top hits

e value

%identity

Alignment

P27070 Ribosomal protein S12, mitochondrial

7.4e-17

97.73

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

P60096 Ribosomal protein S12, mitochondrial

7.4e-17

97.73

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

P60097 Ribosomal protein S12, mitochondrial

7.4e-17

97.73

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRV TRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

P68535 Ribosomal protein S12, mitochondrial

2.4e-15

93.18

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

P68536 Ribosomal protein S12, mitochondrial

2.4e-15

93.18

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MP+LNQLIRHGREEKRRTDRTRA DQCPQKQGV PRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

Arabidopsis top hits

e value

%identity

Alignment

AT2G07675.1 Ribosomal protein S12/S23 family protein

2.4e-15

88.64

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

AT2G07773.1 unknown protein

5.1e-05

95.24

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Query:  MPTLNQLIRHGREEKRRTDRT
        MPT NQLIRHGREEKRRTDRT
Subjt:  MPTLNQLIRHGREEKRRTDRT

ATMG00910.1 hypothetical protein

6.6e-05

95.24

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Query:  MPTLNQLIRHGREEKRRTDRT
        MPT NQLIRHGREEKRRTDRT
Subjt:  MPTLNQLIRHGREEKRRTDRT

ATMG00980.1 Ribosomal protein S12/S23 family protein

2.4e-15

88.64

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Query:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK
        MPT NQLIRHGREEKRRTDRTRA D+CPQK GV PRVSTRTPKK
Subjt:  MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

Sequences

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CDS sequence

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ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGT
TTCAACGAGAACACCAAAAAAA

mRNA sequence

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ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCGCGTGT
TTCAACGAGAACACCAAAAAAA

Protein sequence

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MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRVSTRTPKK

MS018037 (gene) of Bitter gourd (TR) v1 genome