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MS018082 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018082
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationscaffold621:6696..6938
RNA-Seq ExpressionMS018082
SyntenyMS018082
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5608422.1 hypothetical protein H5410_019703 [Solanum commersonii]8.7e-1347.44Show/hide
Query:  KVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        KV   LD + RNFLWKG+ E KD++LV  + +  + +  GLG+  ++L N++LL KW WRYI E +  W+ VI AKYG
Subjt:  KVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

RVW15156.1 putative ribonuclease H protein [Vitis vinifera]8.7e-1348.15Show/hide
Query:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        M   VA  LD + R+FLW G SE +  HL++ E I +   + GLGL K+ L+NKALL KW WR+  +K   W++VI AKYG
Subjt:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

RVW45036.1 putative ribonuclease H protein [Vitis vinifera]1.1e-1248.15Show/hide
Query:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        M   VA  LD + R+FLW G SE K  HL++ E I +   + GLGL K+ L+NKALL KW WR+  ++   W++VI AKYG
Subjt:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

RVW66520.1 LINE-1 reverse transcriptase-like [Vitis vinifera]8.7e-1348.1Show/hide
Query:  NKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        N VA  LD + R+FLW G SE +  HL++ E I +   + GLGL K+  +NKALL KW WR+  +K   W++VI AKYG
Subjt:  NKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

RVW90073.1 LINE-1 reverse transcriptase-like [Vitis vinifera]6.7e-1348.72Show/hide
Query:  KVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        K+A  LD + R+FLW G SE K  HL++ E I +  ++ GLGL K+ L+NKALL KW WR+  ++   W++VI AKYG
Subjt:  KVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

TrEMBL top hitse value%identityAlignment
A0A438BVZ6 Putative ribonuclease H protein4.2e-1348.15Show/hide
Query:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        M   VA  LD + R+FLW G SE +  HL++ E I +   + GLGL K+ L+NKALL KW WR+  +K   W++VI AKYG
Subjt:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

A0A438EB18 Putative ribonuclease H protein5.5e-1348.15Show/hide
Query:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        M   VA  LD + R+FLW G SE K  HL++ E I +   + GLGL K+ L+NKALL KW WR+  ++   W++VI AKYG
Subjt:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

A0A438FIZ5 Putative ribonuclease H protein5.5e-1348.15Show/hide
Query:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        M   VA  LD + R+FLW G SE K  HL++ E I +   + GLGL K+ L+NKALL KW WR+  ++   W++VI AKYG
Subjt:  MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

A0A438G2V4 LINE-1 reverse transcriptase-like4.2e-1348.1Show/hide
Query:  NKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        N VA  LD + R+FLW G SE +  HL++ E I +   + GLGL K+  +NKALL KW WR+  +K   W++VI AKYG
Subjt:  NKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

A0A438I044 LINE-1 reverse transcriptase-like3.2e-1348.72Show/hide
Query:  KVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG
        K+A  LD + R+FLW G SE K  HL++ E I +  ++ GLGL K+ L+NKALL KW WR+  ++   W++VI AKYG
Subjt:  KVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.0e-0838.89Show/hide
Query:  LDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKY
        LD + R FLW  ++E K  HLV+   +     E GLG+   K +N+AL++K  WR + EK++ W  V++ KY
Subjt:  LDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAACAAAGTTGCTGATTTTCTTGATGGCATTATTAGAAATTTCCTTTGGAAGGGCAGCAGTGAGCACAAAGATTTCCATCTGGTTCGGCAAGAAACCATT
CAACAAACTATTGATGAAAGAGGTCTTGGTTTATATAAGATGAAGCTGATAAACAAAGCTCTATTAGCTAAATGGACTTGGAGATACATACCTGAGAAATCAACC
TTTTGGAGGAGAGTTATAGAAGCCAAGTATGGT
mRNA sequenceShow/hide mRNA sequence
ATGCTGAACAAAGTTGCTGATTTTCTTGATGGCATTATTAGAAATTTCCTTTGGAAGGGCAGCAGTGAGCACAAAGATTTCCATCTGGTTCGGCAAGAAACCATT
CAACAAACTATTGATGAAAGAGGTCTTGGTTTATATAAGATGAAGCTGATAAACAAAGCTCTATTAGCTAAATGGACTTGGAGATACATACCTGAGAAATCAACC
TTTTGGAGGAGAGTTATAGAAGCCAAGTATGGT
Protein sequenceShow/hide protein sequence
MLNKVADFLDGIIRNFLWKGSSEHKDFHLVRQETIQQTIDERGLGLYKMKLINKALLAKWTWRYIPEKSTFWRRVIEAKYG