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MS018086 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018086
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold621:69382..69630
RNA-Seq ExpressionMS018086
SyntenyMS018086
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595447.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.7e-3081.93Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GK+NE M+LIE MPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

XP_022158877.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X1 [Momordica charantia]1.3e-3285.54Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GK+NE M LIEKMPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

XP_022158883.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X2 [Momordica charantia]1.3e-3285.54Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GK+NE M LIEKMPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

XP_022924963.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita moschata]4.7e-3081.93Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GK+NE M+LIE MPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

XP_022966207.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita maxima]9.5e-3183.13Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQKTEHYACMVDLLGR GK+NE M+LIE MPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

TrEMBL top hitse value%identityAlignment
A0A0A0L0T3 DYW_deaminase domain-containing protein6.7e-3081.71Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EAL+VFHDMHFS I+ DD+TFVGVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GK+NE M+LIEKMPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

A0A6J1DX33 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X16.4e-3385.54Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GK+NE M LIEKMPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

A0A6J1DXB5 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X26.4e-3385.54Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GK+NE M LIEKMPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

A0A6J1EAQ8 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like2.3e-3081.93Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GK+NE M+LIE MPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

A0A6J1HMD2 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like4.6e-3183.13Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQKTEHYACMVDLLGR GK+NE M+LIE MPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

SwissProt top hitse value%identityAlignment
Q56XI1 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial9.9e-1551.22Show/hide
Query:  EEALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM
        EEAL+VF +M  S S   +++TFV  LSACSY   V+  L+I+ SME  + V+  T HYACMVD+LGR G+ NE M +I+ M
Subjt:  EEALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM

Q9FMA1 Pentatricopeptide repeat-containing protein At5g563103.8e-1444.44Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMP
        EAL +F+ M  + +  +D+TF+ +LSACS+   V +   +FNSM  KY +    EHY CM+DLLGR GK+ E   +I+ MP
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMP

Q9FXB9 Pentatricopeptide repeat-containing protein At1g56690, mitochondrial3.1e-1648.15Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM
        EEAL++FH+M  S  + + +T + +L+ACSY   ++  LEIF SME K+ V    EHY+C VD+LGR G+V++ M LIE M
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM

Q9LND4 Pentatricopeptide repeat-containing protein At1g06140, mitochondrial4.0e-1649.4Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEAL  FH M   ++V + +TFV +LSACS++ NVK   + F SM   Y V  + EHYACMVDLLGR G++ E  + I+ MP+
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

Q9LSB8 Putative pentatricopeptide repeat-containing protein At3g159306.4e-1444.58Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        +EA++VF  M   SI  DDIT++GVLSAC+++  V    + F  M   + +E    HY CMVD+LGR G V E   ++ KMPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

Arabidopsis top hitse value%identityAlignment
AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein2.9e-1749.4Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        EEAL  FH M   ++V + +TFV +LSACS++ NVK   + F SM   Y V  + EHYACMVDLLGR G++ E  + I+ MP+
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein7.1e-1651.22Show/hide
Query:  EEALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM
        EEAL+VF +M  S S   +++TFV  LSACSY   V+  L+I+ SME  + V+  T HYACMVD+LGR G+ NE M +I+ M
Subjt:  EEALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM

AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein2.2e-1748.15Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM
        EEAL++FH+M  S  + + +T + +L+ACSY   ++  LEIF SME K+ V    EHY+C VD+LGR G+V++ M LIE M
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKM

AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein4.6e-1544.58Show/hide
Query:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM
        +EA++VF  M   SI  DDIT++GVLSAC+++  V    + F  M   + +E    HY CMVD+LGR G V E   ++ KMPM
Subjt:  EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM

AT5G56310.1 Pentatricopeptide repeat (PPR) superfamily protein2.7e-1544.44Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMP
        EAL +F+ M  + +  +D+TF+ +LSACS+   V +   +FNSM  KY +    EHY CM+DLLGR GK+ E   +I+ MP
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGGAAGCATTACAAGTTTTCCATGATATGCATTTTTCAAGTATCGTGTCTGATGATATCACATTTGTTGGAGTTCTTTCAGCATGTAGTTACACTAGGAATGTG
AAAATGGACCTAGAAATTTTCAATTCCATGGAACCAAAGTATCATGTGGAACAAAAAACAGAACACTATGCATGCATGGTTGATTTGCTTGGTCGAGTTGGTAAG
GTAAATGAGGAAATGAATTTAATTGAAAAAATGCCAATG
mRNA sequenceShow/hide mRNA sequence
GAGGAAGCATTACAAGTTTTCCATGATATGCATTTTTCAAGTATCGTGTCTGATGATATCACATTTGTTGGAGTTCTTTCAGCATGTAGTTACACTAGGAATGTG
AAAATGGACCTAGAAATTTTCAATTCCATGGAACCAAAGTATCATGTGGAACAAAAAACAGAACACTATGCATGCATGGTTGATTTGCTTGGTCGAGTTGGTAAG
GTAAATGAGGAAATGAATTTAATTGAAAAAATGCCAATG
Protein sequenceShow/hide protein sequence
EEALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKVNEEMNLIEKMPM