; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018122 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018122
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description(-)-germacrene D synthase-like isoform X2
Genome locationscaffold461:616726..616977
RNA-Seq ExpressionMS018122
SyntenyMS018122
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR001906 - Terpene synthase, N-terminal domain
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR008949 - Isoprenoid synthase domain superfamily
IPR036965 - Terpene synthase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143456.1 (-)-germacrene D synthase-like isoform X1 [Momordica charantia]2.0e-2075.29Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC
        +V KKLQKLKEEVRSMLAAA+K S+ LSLIDSI  L LS+HFEEEINEILE +QN RSL D+D  + IVALRFR LRQ+GYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC

XP_022143457.1 (-)-germacrene D synthase-like isoform X2 [Momordica charantia]2.0e-2075.29Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC
        +V KKLQKLKEEVRSMLAAA+K S+ LSLIDSI  L LS+HFEEEINEILE +QN RSL D+D  + IVALRFR LRQ+GYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC

XP_022143530.1 valencene synthase-like isoform X2 [Momordica charantia]7.8e-1768.6Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC
        +VRK+L++ +EEVR ML AA+K S  LSLIDSI  L +SYHFE EINEILEH+QN       DEDIY IVALRFR LRQQGYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC

XP_022143531.1 (-)-germacrene D synthase-like isoform X1 [Momordica charantia]4.6e-1769.77Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC
        +VRK+L++ +EEVR ML AA+K S  LSLIDSI  L LSYHFE EINEILEH+QN       DEDIY IVALRFR LRQQGYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC

XP_022143532.1 (-)-germacrene D synthase-like isoform X2 [Momordica charantia]4.6e-1769.77Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC
        +VRK+L++ +EEVR ML AA+K S  LSLIDSI  L LSYHFE EINEILEH+QN       DEDIY IVALRFR LRQQGYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC

TrEMBL top hitse value%identityAlignment
A0A6J1CP21 valencene synthase-like isoform X23.8e-1768.6Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC
        +VRK+L++ +EEVR ML AA+K S  LSLIDSI  L +SYHFE EINEILEH+QN       DEDIY IVALRFR LRQQGYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC

A0A6J1CQA8 (-)-germacrene D synthase-like isoform X19.6e-2175.29Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC
        +V KKLQKLKEEVRSMLAAA+K S+ LSLIDSI  L LS+HFEEEINEILE +QN RSL D+D  + IVALRFR LRQ+GYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC

A0A6J1CQI9 (-)-germacrene D synthase-like isoform X12.2e-1769.77Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC
        +VRK+L++ +EEVR ML AA+K S  LSLIDSI  L LSYHFE EINEILEH+QN       DEDIY IVALRFR LRQQGYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC

A0A6J1CQW1 (-)-germacrene D synthase-like isoform X29.6e-2175.29Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC
        +V KKLQKLKEEVRSMLAAA+K S+ LSLIDSI  L LS+HFEEEINEILE +QN RSL D+D  + IVALRFR LRQ+GYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC

A0A6J1CR35 (-)-germacrene D synthase-like isoform X22.2e-1769.77Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC
        +VRK+L++ +EEVR ML AA+K S  LSLIDSI  L LSYHFE EINEILEH+QN       DEDIY IVALRFR LRQQGYSVSC
Subjt:  LVRKKLQKLKEEVRSMLAAAKK-SRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSL--GDEDIYIIVALRFRWLRQQGYSVSC

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase3.0e-1144.68Show/hide
Query:  VRKKLQKLKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILEHV----------QNPRSLGDEDIYIIVALRFRWLRQQGYSVSC
        ++++ +KLKEE+R M+ A  +++   L+L+DSI  L +SYHFE+E++E LEH+           N  S G ED++ I AL FR LRQQGY +SC
Subjt:  VRKKLQKLKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILEHV----------QNPRSLGDEDIYIIVALRFRWLRQQGYSVSC

B9SCB6 Probable terpene synthase 21.3e-1148.81Show/hide
Query:  VRKKLQKLKEEVRSMLAAA-KKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC
        + +++++LKEEV+ M+A+A + S+ L+LID +  L +SYHFE+EI E L+ V N  S  D+D  +  VALRFR LR+QG +VSC
Subjt:  VRKKLQKLKEEVRSMLAAA-KKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYI-IVALRFRWLRQQGYSVSC

O49853 (+)-delta-cadinene synthase isozyme C26.7e-1145.12Show/hide
Query:  KKLQKLKEEVRSMLAA--AKKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYIIVALRFRWLRQQGYSVSC
        K+ Q+LKEEVR M+ A  A  ++ L+ IDS+  L +SYHF +EI + LE++ +  +  + D+Y   +LRFR LR+ GY+VSC
Subjt:  KKLQKLKEEVRSMLAA--AKKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYIIVALRFRWLRQQGYSVSC

O65323 5-epiaristolochene synthase8.7e-1145.88Show/hide
Query:  KKLQKLKEEVRSMLAAA--KKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIY----IIVALRFRWLRQQGYSVS
        ++++ LKE+ RSML A+  K S TL+LID I  L ++YHFE+EI+EIL+ + N  S  + D+Y        L+FR LRQ GY++S
Subjt:  KKLQKLKEEVRSMLAAA--KKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIY----IIVALRFRWLRQQGYSVS

Q6Q3H3 (-)-germacrene D synthase3.5e-1247.62Show/hide
Query:  VRKKLQKLKEEVRSMLAAA--KKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYIIVALRFRWLRQQGYSVSC
        +++ +Q+LKEEVR ML AA    ++ L LID+I  L ++YHFE EI+E+L+H+ +   +  E+     +LRFR LRQQGY VSC
Subjt:  VRKKLQKLKEEVRSMLAAA--KKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYIIVALRFRWLRQQGYSVSC

Arabidopsis top hitse value%identityAlignment
AT3G25810.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein4.2e-0840.91Show/hide
Query:  LVRKKLQKLKEEVRSMLAAAKKSRTLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS
        +++KK++K+ EEV +     K    L LID +  L +SYHFE+EIN IL   H++N +++     +ED++   AL FR LRQ G+ VS
Subjt:  LVRKKLQKLKEEVRSMLAAAKKSRTLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS

AT3G25820.1 terpene synthase-like sequence-1,8-cineole1.6e-0745.12Show/hide
Query:  LKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS
        LK++V+SML   KKSR   L LID +  L +SYHFE EIN+ L   H++  R+      +ED++   +L FR LRQ G+ VS
Subjt:  LKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS

AT3G25820.2 terpene synthase-like sequence-1,8-cineole1.6e-0745.12Show/hide
Query:  LKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS
        LK++V+SML   KKSR   L LID +  L +SYHFE EIN+ L   H++  R+      +ED++   +L FR LRQ G+ VS
Subjt:  LKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS

AT3G25830.1 terpene synthase-like sequence-1,8-cineole1.6e-0745.12Show/hide
Query:  LKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS
        LK++V+SML   KKSR   L LID +  L +SYHFE EIN+ L   H++  R+      +ED++   +L FR LRQ G+ VS
Subjt:  LKEEVRSMLAAAKKSR--TLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSL----GDEDIYIIVALRFRWLRQQGYSVS

AT4G16740.1 terpene synthase 031.5e-0538.2Show/hide
Query:  KKLQKLKEEVRSMLAAAK-KSRTLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSLGDE-------DIYIIVALRFRWLRQQGYSVS
        +++  LK+EV  ML   +     L LID++  L +SYHFE+EI + L   HV+N R+  +        D+Y   AL FR LRQ G+S++
Subjt:  KKLQKLKEEVRSMLAAAK-KSRTLSLIDSIPHLSLSYHFEEEINEILE--HVQNPRSLGDE-------DIYIIVALRFRWLRQQGYSVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGTCAGGAAAAAACTTCAAAAACTGAAAGAAGAAGTGAGAAGCATGCTTGCAGCTGCTAAAAAGTCTAGAACATTAAGTTTGATTGATTCAATCCCTCACCTGAGTTT
GTCTTACCACTTTGAAGAAGAAATTAATGAAATTCTAGAGCATGTGCAAAATCCTCGCAGTCTTGGTGATGAAGATATTTACATTATTGTTGCTCTTAGATTTCGATGGC
TTAGACAACAAGGTTACTCTGTGTCATGT
mRNA sequenceShow/hide mRNA sequence
TTGGTCAGGAAAAAACTTCAAAAACTGAAAGAAGAAGTGAGAAGCATGCTTGCAGCTGCTAAAAAGTCTAGAACATTAAGTTTGATTGATTCAATCCCTCACCTGAGTTT
GTCTTACCACTTTGAAGAAGAAATTAATGAAATTCTAGAGCATGTGCAAAATCCTCGCAGTCTTGGTGATGAAGATATTTACATTATTGTTGCTCTTAGATTTCGATGGC
TTAGACAACAAGGTTACTCTGTGTCATGT
Protein sequenceShow/hide protein sequence
LVRKKLQKLKEEVRSMLAAAKKSRTLSLIDSIPHLSLSYHFEEEINEILEHVQNPRSLGDEDIYIIVALRFRWLRQQGYSVSC