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MS018134 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018134
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold669:255399..255614
RNA-Seq ExpressionMS018134
SyntenyMS018134
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6662259.1 hypothetical protein CIPAW_03G231100 [Carya illinoinensis]6.6e-0440.3Show/hide
Query:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWVQLSLLEDNEA
        SW  ++PG+ +  KRL+++  + +   DIV LQETKL+ +D K+++SLW    V W   S L  N A
Subjt:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWVQLSLLEDNEA
XP_022154822.1 uncharacterized protein LOC111021983 [Momordica charantia]2.1e-1063.33Show/hide
Query:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWVQLS
        SW  ++ GI  YKKRLK+KK I+K + D+VLLQETKLQQ+D  +IKSLWSSKDV W  L+
Subjt:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWVQLS
XP_038876676.1 uncharacterized protein LOC120069076 [Benincasa hispida]3.9e-0455.32Show/hide
Query:  GIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDV
        G+GD  KRL +K+F+ K + DIVL+QETK  +++   IKSLWSSK+V
Subjt:  GIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDV
TrEMBL top hitse value%identityAlignment
A0A5A7V639 Uncharacterized protein9.3e-0449.02Show/hide
Query:  IPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIW
        +  + D  KR+ +K+F+ K H DIVL+QE+K ++ D   IKSLWSSKD  W
Subjt:  IPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIW
A0A5A7VKQ0 Uncharacterized protein5.4e-0444.9Show/hide
Query:  GIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIW
        G+ D  KR+ +KK I  HH D+V++QE+K++  D    KS+WSSK++ W
Subjt:  GIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIW
A0A6J1DMQ9 uncharacterized protein LOC1110219831.0e-1063.33Show/hide
Query:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWVQLS
        SW  ++ GI  YKKRLK+KK I+K + D+VLLQETKLQQ+D  +IKSLWSSKDV W  L+
Subjt:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWVQLS
F4NCJ8 Reverse transcriptase domain-containing protein5.4e-0438.6Show/hide
Query:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWV
        SW  ++ G+G   KR  ++K I KH    V +QETK++++ EK+++S+W S +V W+
Subjt:  SWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCGTGGAACATTCCTGGTATAGGCACATTCCTGGTATAGGCGATTATAAGAAAAGGTTGAAGATTAAGAAGTTTATATTGAAGCACCACCATGATATTGTCCTTCTTCA
AGAAACCAAATTGCAGCAGCTTGACGAGAAAGTTATAAAATCATTGTGGAGTTCAAAGGATGTTATTTGGGTGCAGTTGAGTCTATTGGAAGATAATGAAGCTGTT
mRNA sequenceShow/hide mRNA sequence
GTCGTGGAACATTCCTGGTATAGGCACATTCCTGGTATAGGCGATTATAAGAAAAGGTTGAAGATTAAGAAGTTTATATTGAAGCACCACCATGATATTGTCCTTCTTCA
AGAAACCAAATTGCAGCAGCTTGACGAGAAAGTTATAAAATCATTGTGGAGTTCAAAGGATGTTATTTGGGTGCAGTTGAGTCTATTGGAAGATAATGAAGCTGTT
Protein sequenceShow/hide protein sequence
VVEHSWYRHIPGIGDYKKRLKIKKFILKHHHDIVLLQETKLQQLDEKVIKSLWSSKDVIWVQLSLLEDNEAV