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MS018136 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018136
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold669:350845..351213
RNA-Seq ExpressionMS018136
SyntenyMS018136
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.1e-1032.06Show/hide
Query:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---------AQQSTTFQTDSLNIPQKSPSNKS---KWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNW
        +W IW  RN  +FRGE      L   +  F+           Q+   Q +   +P+   +      +W  PP + W LN DASWS+    GG+GW++ + 
Subjt:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---------AQQSTTFQTDSLNIPQKSPSNKS---KWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNW

Query:  EGDIVLAGNRFVEACCNVKLLEATAILEGLQ
         G+IVLAGN  +     +  LE   I+ GLQ
Subjt:  EGDIVLAGNRFVEACCNVKLLEATAILEGLQ

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-1129.46Show/hide
Query:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---AQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI
        +W IW  RN  +F+G  P    +   + +++   A ++T  +  S N     I +   +  ++W+PP  ++W LN +A+W    + GG+GW++R+ +G++
Subjt:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---AQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI

Query:  VLAGNRFVEACCNVKLLEATAILEGLQCL
        + A  R + A  N+  LE  AI EGL+ +
Subjt:  VLAGNRFVEACCNVKLLEATAILEGLQCL

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]7.3e-1133.07Show/hide
Query:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFVE
        W IW++RN +V    +      I   T+    + TT    +LN+  K+      W PP  H W LN DA+W DS+H GG+GW++R+ EG       RF+ 
Subjt:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFVE

Query:  ACCNVKLLEATAILEGLQ------CLE
        A C   L ++  +  G++      CLE
Subjt:  ACCNVKLLEATAILEGLQ------CLE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.3e-4166.67Show/hide
Query:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFV
        SWVIW+HRN V+FRGE  S+ ++I Q+TKF+ + S   +T SL++  K+ +NK KW PPP+H WTLNADASWSDS HRGG+GW+IR+W+GDIVLAGNRFV
Subjt:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFV

Query:  EACCNVKLLEATAILEGLQCLEN
        EAC NVKLLEA+AILEGL+ L N
Subjt:  EACCNVKLLEATAILEGLQCLEN

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.6e-1030.23Show/hide
Query:  SWVIWSHRNNVVFRG---EQPSYLSLINQVTKFMAQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI
        +W IW  RN  +F+G   E      +I++     A + T  +  S N     I +   +  ++W+PP  ++W LN DA+W    + GG+GW++R+ +G++
Subjt:  SWVIWSHRNNVVFRG---EQPSYLSLINQVTKFMAQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI

Query:  VLAGNRFVEACCNVKLLEATAILEGLQCL
        + A  R +    N+  LE  AI EGL+ +
Subjt:  VLAGNRFVEACCNVKLLEATAILEGLQCL

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.1e-1229.46Show/hide
Query:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---AQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI
        +W IW  RN  +F+G  P    +   + +++   A ++T  +  S N     I +   +  ++W+PP  ++W LN +A+W    + GG+GW++R+ +G++
Subjt:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---AQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI

Query:  VLAGNRFVEACCNVKLLEATAILEGLQCL
        + A  R + A  N+  LE  AI EGL+ +
Subjt:  VLAGNRFVEACCNVKLLEATAILEGLQCL

A0A6J1CQG0 uncharacterized protein LOC1110132161.0e-1032.06Show/hide
Query:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---------AQQSTTFQTDSLNIPQKSPSNKS---KWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNW
        +W IW  RN  +FRGE      L   +  F+           Q+   Q +   +P+   +      +W  PP + W LN DASWS+    GG+GW++ + 
Subjt:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFM---------AQQSTTFQTDSLNIPQKSPSNKS---KWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNW

Query:  EGDIVLAGNRFVEACCNVKLLEATAILEGLQ
         G+IVLAGN  +     +  LE   I+ GLQ
Subjt:  EGDIVLAGNRFVEACCNVKLLEATAILEGLQ

A0A6J1D4B6 uncharacterized protein LOC1110171813.5e-1133.07Show/hide
Query:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFVE
        W IW++RN +V    +      I   T+    + TT    +LN+  K+      W PP  H W LN DA+W DS+H GG+GW++R+ EG       RF+ 
Subjt:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFVE

Query:  ACCNVKLLEATAILEGLQ------CLE
        A C   L ++  +  G++      CLE
Subjt:  ACCNVKLLEATAILEGLQ------CLE

A0A6J1DNV9 uncharacterized protein LOC1110224031.1e-4166.67Show/hide
Query:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFV
        SWVIW+HRN V+FRGE  S+ ++I Q+TKF+ + S   +T SL++  K+ +NK KW PPP+H WTLNADASWSDS HRGG+GW+IR+W+GDIVLAGNRFV
Subjt:  SWVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFV

Query:  EACCNVKLLEATAILEGLQCLEN
        EAC NVKLLEA+AILEGL+ L N
Subjt:  EACCNVKLLEATAILEGLQCLEN

A0A6J1DSV1 uncharacterized protein LOC1110236087.9e-1130.23Show/hide
Query:  SWVIWSHRNNVVFRG---EQPSYLSLINQVTKFMAQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI
        +W IW  RN  +F+G   E      +I++     A + T  +  S N     I +   +  ++W+PP  ++W LN DA+W    + GG+GW++R+ +G++
Subjt:  SWVIWSHRNNVVFRG---EQPSYLSLINQVTKFMAQQSTTFQTDSLN-----IPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDI

Query:  VLAGNRFVEACCNVKLLEATAILEGLQCL
        + A  R +    N+  LE  AI EGL+ +
Subjt:  VLAGNRFVEACCNVKLLEATAILEGLQCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein5.2e-0729.13Show/hide
Query:  WVIWSHRNNVVF--RGEQPSYLSL--INQVTKFMAQQSTTFQTD---SLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVL
        W +W  RN  +F  + + P Y +   I   T+++    TT  T+   + N  Q S  + S+W PPP      N D+ ++        GW IR   G IVL
Subjt:  WVIWSHRNNVVF--RGEQPSYLSL--INQVTKFMAQQSTTFQTD---SLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVL

Query:  AGNRFVEACCNVKLLEATAILEGLQCL
         GN  +++       EA   L  LQ +
Subjt:  AGNRFVEACCNVKLLEATAILEGLQCL

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-0926.32Show/hide
Query:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTD-SLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFV
        W +W  RN ++F+G++     ++ +  +   + ST  + +   + PQ   +   +W+ PP      N DA+W     R G+GW++RN  G ++  G R +
Subjt:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTD-SLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFV

Query:  EACCNVKLLEATAI
            NV   E  A+
Subjt:  EACCNVKLLEATAI

AT4G29090.1 Ribonuclease H-like superfamily protein1.2e-1133.33Show/hide
Query:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNI-PQKSPSNKSKWRPPPLHTWT-LNADASWSDSIHRGGVGWVIRNWEGDIVLAGNR
        W +W +RN +VFRG + +   ++ +    + +     + +S    PQ + S+  +WRPPP H W   N DA+W+    R G+GWV+RN +G++   G R
Subjt:  WVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNI-PQKSPSNKSKWRPPPLHTWT-LNADASWSDSIHRGGVGWVIRNWEGDIVLAGNR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.8e-0623.97Show/hide
Query:  WVIWSHRNNVVFRGEQPSYLSLINQV---TKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNR
        W IW   N++VF   +  + + +      TK     + T +  + N     PS  +KW PP       N DAS  +     G+GW++RN +G ++  G  
Subjt:  WVIWSHRNNVVFRGEQPSYLSLINQV---TKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNR

Query:  FVEACCNVKLLEATAILEGLQ
          +     +  E + ++  +Q
Subjt:  FVEACCNVKLLEATAILEGLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCGTGGGTCATTTGGAGTCACCGAAACAATGTGGTTTTTCGTGGAGAGCAACCTAGCTATCTGAGTTTAATTAATCAAGTTACAAAGTTTATGGCACAACAATCTACCAC
ATTTCAGACAGATTCTTTGAACATTCCACAGAAAAGCCCATCCAACAAATCGAAATGGCGTCCCCCACCCTTACATACCTGGACGCTCAATGCTGATGCCTCGTGGTCAG
ACTCGATTCACAGAGGAGGGGTTGGGTGGGTGATCCGTAATTGGGAAGGAGATATTGTACTCGCCGGAAATCGCTTCGTGGAAGCTTGTTGCAATGTCAAACTTCTGGAG
GCGACGGCAATCTTGGAGGGTCTTCAATGCTTGGAAAAC
mRNA sequenceShow/hide mRNA sequence
TCGTGGGTCATTTGGAGTCACCGAAACAATGTGGTTTTTCGTGGAGAGCAACCTAGCTATCTGAGTTTAATTAATCAAGTTACAAAGTTTATGGCACAACAATCTACCAC
ATTTCAGACAGATTCTTTGAACATTCCACAGAAAAGCCCATCCAACAAATCGAAATGGCGTCCCCCACCCTTACATACCTGGACGCTCAATGCTGATGCCTCGTGGTCAG
ACTCGATTCACAGAGGAGGGGTTGGGTGGGTGATCCGTAATTGGGAAGGAGATATTGTACTCGCCGGAAATCGCTTCGTGGAAGCTTGTTGCAATGTCAAACTTCTGGAG
GCGACGGCAATCTTGGAGGGTCTTCAATGCTTGGAAAAC
Protein sequenceShow/hide protein sequence
SWVIWSHRNNVVFRGEQPSYLSLINQVTKFMAQQSTTFQTDSLNIPQKSPSNKSKWRPPPLHTWTLNADASWSDSIHRGGVGWVIRNWEGDIVLAGNRFVEACCNVKLLE
ATAILEGLQCLEN