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MS018152 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018152
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription initiation factor TFIID subunit 6
Genome locationscaffold166:118956..119150
RNA-Seq ExpressionMS018152
SyntenyMS018152
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0046695 - SLIK (SAGA-like) complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR037796 - Transcription initiation factor TFIID subunit 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140111.2 transcription initiation factor TFIID subunit 6 [Cucumis sativus]3.1e-2183.08Show/hide
Query:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

XP_008449395.1 PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo]3.1e-2183.08Show/hide
Query:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

XP_022135619.1 transcription initiation factor TFIID subunit 6 [Momordica charantia]2.4e-2188.33Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

XP_038888294.1 transcription initiation factor TFIID subunit 6-like isoform X1 [Benincasa hispida]1.4e-2184.62Show/hide
Query:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        SS   KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

XP_038888295.1 transcription initiation factor TFIID subunit 6-like isoform X2 [Benincasa hispida]1.4e-2184.62Show/hide
Query:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        SS   KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

TrEMBL top hitse value%identityAlignment
A0A0A0KEI5 TAF domain-containing protein1.5e-2183.08Show/hide
Query:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

A0A1S3C124 transcription initiation factor TFIID subunit 6-like7.6e-2185Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        KKAL SLA DSGLHPLV YFTC+I DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

A0A1S4DXQ6 transcription initiation factor TFIID subunit 6-like1.5e-2183.08Show/hide
Query:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

A0A5A7URU3 Transcription initiation factor TFIID subunit 6-like1.5e-2183.08Show/hide
Query:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        SS   KKAL SLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

A0A6J1C1Y6 transcription initiation factor TFIID subunit 61.2e-2188.33Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        KKALASLA DSGLHPLV YFTCFI DEVA GLGD+SLLFALMRVVWSLLQNPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

SwissProt top hitse value%identityAlignment
F4HVA6 Transcription initiation factor TFIID subunit 6b5.6e-1355Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        ++ALASL +D GLHPLV +FT FI +E+   + ++ +L ALMR+  SLL NPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

O74462 Transcription initiation factor TFIID subunit 61.1e-0848.28Show/hide
Query:  ALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        AL+SL  D GLH L+ YF  F+ D V   LG+  +L  LM + W+LL NP+  +EPYV
Subjt:  ALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

P53040 Transcription initiation factor TFIID subunit 65.4e-0842.62Show/hide
Query:  KKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        K+ AL SL  DSGLH LV YF  FI +++   L D  LL  ++ +++SLL N    ++PY+
Subjt:  KKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

Q9MAU3 Transcription initiation factor TFIID subunit 69.8e-1873.33Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

Arabidopsis top hitse value%identityAlignment
AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 597.0e-1973.33Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

AT1G04950.2 TATA BOX ASSOCIATED FACTOR II 597.0e-1973.33Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

AT1G04950.3 TATA BOX ASSOCIATED FACTOR II 597.0e-1973.33Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        K+AL SLA DSGLHPLV YFT FI DEV++GL DF LLF LM +V SLLQNPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

AT1G54360.1 TBP-ASSOCIATED FACTOR 6B4.0e-1455Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        ++ALASL +D GLHPLV +FT FI +E+   + ++ +L ALMR+  SLL NPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV

AT1G54360.2 TBP-ASSOCIATED FACTOR 6B4.0e-1455Show/hide
Query:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV
        ++ALASL +D GLHPLV +FT FI +E+   + ++ +L ALMR+  SLL NPH HIEPY+
Subjt:  KKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTTCTTTTAAAAAAAAAAAAGCATTAGCAAGTTTAGCTATGGACTCCGGACTTCACCCATTGGTTCTTTATTTTACGTGCTTTATAGTTGATGAGGTTGCACATGGACT
GGGTGATTTTTCCCTTCTTTTTGCTTTAATGCGTGTCGTTTGGAGCCTTCTTCAGAATCCTCACACTCACATAGAACCTTATGTG
mRNA sequenceShow/hide mRNA sequence
AGTTCTTTTAAAAAAAAAAAAGCATTAGCAAGTTTAGCTATGGACTCCGGACTTCACCCATTGGTTCTTTATTTTACGTGCTTTATAGTTGATGAGGTTGCACATGGACT
GGGTGATTTTTCCCTTCTTTTTGCTTTAATGCGTGTCGTTTGGAGCCTTCTTCAGAATCCTCACACTCACATAGAACCTTATGTG
Protein sequenceShow/hide protein sequence
SSFKKKKALASLAMDSGLHPLVLYFTCFIVDEVAHGLGDFSLLFALMRVVWSLLQNPHTHIEPYV