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MS018176 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018176
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold56:205940..206119
RNA-Seq ExpressionMS018176
SyntenyMS018176
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1147.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1147.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.4e-1247.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1147.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.4e-1247.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein5.9e-1247.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.9e-1247.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.9e-1247.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein4.5e-1247.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein4.5e-1247.46Show/hide
Query:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
        KK KFF+W ++H  +NT D+LQ RLP+  +SP+WC +CN   E +++ F+HCP++  LW
Subjt:  KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAAGTTCAAATTTTTCCTTTGGTGTATTCTCCATCGGGCGCTCAATACACAGGACAAACTACAATCTCGCCTGCCATCTATTTGCATGAGTCCAAGCTGGTGCGTCCT
TTGCAATAATTGTGCTGAAACATTGGACTACTTTTTTCTACATTGCCCCTTCACAGTGGCCCTTTGGCAT
mRNA sequenceShow/hide mRNA sequence
AAGAAGTTCAAATTTTTCCTTTGGTGTATTCTCCATCGGGCGCTCAATACACAGGACAAACTACAATCTCGCCTGCCATCTATTTGCATGAGTCCAAGCTGGTGCGTCCT
TTGCAATAATTGTGCTGAAACATTGGACTACTTTTTTCTACATTGCCCCTTCACAGTGGCCCTTTGGCAT
Protein sequenceShow/hide protein sequence
KKFKFFLWCILHRALNTQDKLQSRLPSICMSPSWCVLCNNCAETLDYFFLHCPFTVALWH