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MS018187 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018187
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome locationscaffold56:388984..389238
RNA-Seq ExpressionMS018187
SyntenyMS018187
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]1.2e-1548.24Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FSI+S W+A+CP+   V    ++W  G IPKH F +WLAI DRL T D +  W SS P  C+LC   +E+RDH+FF C     VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

XP_018443759.1 PREDICTED: uncharacterized protein LOC108815759 [Raphanus sativus]2.6e-1548.24Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS S  W  L P   +V  H V+W  G IPKH FLSW+A  DR+ T D +  W    P CCVLC    E+R H+FFDC  S+ VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

XP_018463941.1 PREDICTED: uncharacterized protein LOC108835151 [Raphanus sativus]5.7e-1549.41Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS S  W AL P    V  H V+W  G IPKH FLSW+A  DR+ T D +  W    P  CVLC    ETR H+FFDC  S+ VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

XP_018479938.1 PREDICTED: uncharacterized protein LOC108850998 [Raphanus sativus]1.5e-1550.59Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS SS W AL    T V  H  +W  G +PKH F+SWLA  DRL+T D + SW  + P  CVLC    E+RDH+FFDC  S  VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]2.0e-1549.41Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS+SSVW  L P+   V   Y++W  G IPKH F+SWLAI DRL T + +R W +  P  CV C   +E+RDH+F DC  S  VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

TrEMBL top hitse value%identityAlignment
A0A5A7TZS0 Reverse transcriptase domain-containing protein5.6e-1648.24Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FSI+S W+A+CP+   V    ++W  G IPKH F +WLAI DRL T D +  W SS P  C+LC   +E+RDH+FF C     VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

A0A6J0K9Y2 uncharacterized protein LOC1088157591.2e-1548.24Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS S  W  L P   +V  H V+W  G IPKH FLSW+A  DR+ T D +  W    P CCVLC    E+R H+FFDC  S+ VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

A0A6J0LX62 uncharacterized protein LOC1088351512.8e-1549.41Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS S  W AL P    V  H V+W  G IPKH FLSW+A  DR+ T D +  W    P  CVLC    ETR H+FFDC  S+ VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

A0A6J0N7V1 uncharacterized protein LOC1088509987.3e-1650.59Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS SS W AL    T V  H  +W  G +PKH F+SWLA  DRL+T D + SW  + P  CVLC    E+RDH+FFDC  S  VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

A0A6J1E271 uncharacterized protein LOC1110253249.6e-1649.41Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS+SSVW  L P+   V   Y++W  G IPKH F+SWLAI DRL T + +R W +  P  CV C   +E+RDH+F DC  S  VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.0e-1540Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS +    AL P+N  VP +  +W    +PKH F+ W+   +RL T D +RSW  S P  C+LC    E+R H+FF+C     VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.3e-1235.29Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS +  WDA+ P+   +     +W  G +PKH F  W++  DRL T   + SW       C LC    E+RDH+ F C  +  VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.3e-1239.02Show/hide
Query:  SSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        ++ W  L P    V     IW  G IPKH F++W+ +  RL T D + SW    P  C+ C    ETR H+FFDC  +  VW
Subjt:  SSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.2e-1538.82Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW
        FS    W AL P++  VP H  +W    +PKH F+ W+   +RL T D +++W  S P  C+LC    ++R H+FF+C  S +VW
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.8e-1444.44Show/hide
Query:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIIS
        FS ++ W  L P    V  H  IW  G IPKH F+SW+ I  RL T D + SW    P  C+LC    ETR H+FFDC+ +
Subjt:  FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTCTATCTCAAGTGTTTGGGATGCTCTTTGTCCCAAGAACACCTACGTCCCTTCACATTATGTGATTTGGCTTTTTGGTGGTATCCCTAAACATTATTTTTTGAGTTG
GTTGGCTATTGGTGATCGTCTATCGACTTGCGATCATATTCGTTCTTGGTGTTCTTCTAATCCAGGTTGTTGTGTACTTTGCTTTGATAGGATTGAAACTCGGGACCATA
TTTTCTTTGATTGTATTATTAGCAATCTTGTATGG
mRNA sequenceShow/hide mRNA sequence
TTTTCTATCTCAAGTGTTTGGGATGCTCTTTGTCCCAAGAACACCTACGTCCCTTCACATTATGTGATTTGGCTTTTTGGTGGTATCCCTAAACATTATTTTTTGAGTTG
GTTGGCTATTGGTGATCGTCTATCGACTTGCGATCATATTCGTTCTTGGTGTTCTTCTAATCCAGGTTGTTGTGTACTTTGCTTTGATAGGATTGAAACTCGGGACCATA
TTTTCTTTGATTGTATTATTAGCAATCTTGTATGG
Protein sequenceShow/hide protein sequence
FSISSVWDALCPKNTYVPSHYVIWLFGGIPKHYFLSWLAIGDRLSTCDHIRSWCSSNPGCCVLCFDRIETRDHIFFDCIISNLVW