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MS018194 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018194
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold56:440834..441289
RNA-Seq ExpressionMS018194
SyntenyMS018194
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134745.1 F-box protein At3g07870 [Cucumis sativus]9.4e-2144.38Show/hide
Query:  LMEIFTFGTSCK-WTP-GFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHV--IYRLDMEAEELRKSLFP-HSSLCCFIGVLNDTLFNPVRQRFQVCISC
        L+EIFTFG++ + WTP GFL P+L +++HGV+F GGLYW+ +   P  + +  IYRLD+E E+L K   P +     F GV + TL+  V +  +  +  
Subjt:  LMEIFTFGTSCK-WTP-GFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHV--IYRLDMEAEELRKSLFP-HSSLCCFIGVLNDTLFNPVRQRFQVCISC

Query:  VDDGRRFWTKVFDVI---NILVEYSCHRPFH-SQL--IRACEDGKILCLLGGLYLILYDP
        + D    W K F +    N+      H+P+  SQL  I+ACEDGKILCLL GL+LILYDP
Subjt:  VDDGRRFWTKVFDVI---NILVEYSCHRPFH-SQL--IRACEDGKILCLLGGLYLILYDP

XP_008450717.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]5.5e-2137.5Show/hide
Query:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQ------PVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQRFQVCIS
        +++IF FGTSC+WTP    PN   + HGV+FNGGLYW+    Q         T V+YRLD+  E+ +K   P      ++GV N TL+        + + 
Subjt:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQ------PVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQRFQVCIS

Query:  CVDDGRRF--------WTKVFDVI---NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP
        C D             W+K F +    NIL     H P  ++ QL++ CEDG ILCL  G+ LI+YDP
Subjt:  CVDDGRRF--------WTKVFDVI---NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP

XP_022143297.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]6.7e-2747.71Show/hide
Query:  LMEIFTFGTSCKWT-PGFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQ-RFQVCISCVDD
        L+E FTFGT+CK T    +P ++ M+EH V+FNG LYWI   L+   T+V+YRLD+E EEL++  FP S  CC IGV N +L+  + Q R+        +
Subjt:  LMEIFTFGTSCKWT-PGFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQ-RFQVCISCVDD

Query:  GRRFWTKVFDVINILVEYSCHRPFHS---QLIRACEDGKILCLLGGLYLILYD
            WTK FDV+   + Y  HR  +    QLIRAC+DGKILCL+ GL LILY+
Subjt:  GRRFWTKVFDVINILVEYSCHRPFHS---QLIRACEDGKILCLLGGLYLILYD

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]1.9e-2139.88Show/hide
Query:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQP--VVTHVIYRLDMEAEELRKSLFP----HSSLCCFIGVLNDTLFNPVRQRFQVCIS
        ++EIF FGTSC+WTP    P    + HGV+FNGGLYW+     P   ++ VIYRLD+E ++ ++  FP          +IGV NDTL+        + + 
Subjt:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQP--VVTHVIYRLDMEAEELRKSLFP----HSSLCCFIGVLNDTLFNPVRQRFQVCIS

Query:  CVDDGRRFWTKVFDVI-----------NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP
        C D     W    D             N+      H P  +  QLI+ACEDG ILCL  GLYLILYDP
Subjt:  CVDDGRRFWTKVFDVI-----------NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]8.5e-2242.07Show/hide
Query:  MEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQP-VVTHVIYRLDMEAEELRKSLFPH-SSLCCFIGVLNDTLFNPVRQRFQVCISCVDDG
        +EIF FGT+ +WTP  + P+L +++HGV+FNGGLYW VD+LQP    + IYRLD+E E+L K   PH      F GV + TL+             VD+ 
Subjt:  MEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQP-VVTHVIYRLDMEAEELRKSLFPH-SSLCCFIGVLNDTLFNPVRQRFQVCISCVDDG

Query:  RRFWTKVFDVINILVEYSCHRPFH------------SQL--IRACEDGKILCLLGGLYLILYDP
         + W K+ + ++ +  +   RP +            SQL  I+ CEDGKILCLL G  LILYDP
Subjt:  RRFWTKVFDVINILVEYSCHRPFH------------SQL--IRACEDGKILCLLGGLYLILYDP

TrEMBL top hitse value%identityAlignment
A0A0A0KJY9 F-box domain-containing protein4.6e-2144.38Show/hide
Query:  LMEIFTFGTSCK-WTP-GFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHV--IYRLDMEAEELRKSLFP-HSSLCCFIGVLNDTLFNPVRQRFQVCISC
        L+EIFTFG++ + WTP GFL P+L +++HGV+F GGLYW+ +   P  + +  IYRLD+E E+L K   P +     F GV + TL+  V +  +  +  
Subjt:  LMEIFTFGTSCK-WTP-GFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHV--IYRLDMEAEELRKSLFP-HSSLCCFIGVLNDTLFNPVRQRFQVCISC

Query:  VDDGRRFWTKVFDVI---NILVEYSCHRPFH-SQL--IRACEDGKILCLLGGLYLILYDP
        + D    W K F +    N+      H+P+  SQL  I+ACEDGKILCLL GL+LILYDP
Subjt:  VDDGRRFWTKVFDVI---NILVEYSCHRPFH-SQL--IRACEDGKILCLLGGLYLILYDP

A0A1S3BQV8 putative F-box protein At3g211202.7e-2137.5Show/hide
Query:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQ------PVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQRFQVCIS
        +++IF FGTSC+WTP    PN   + HGV+FNGGLYW+    Q         T V+YRLD+  E+ +K   P      ++GV N TL+        + + 
Subjt:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQ------PVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQRFQVCIS

Query:  CVDDGRRF--------WTKVFDVI---NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP
        C D             W+K F +    NIL     H P  ++ QL++ CEDG ILCL  G+ LI+YDP
Subjt:  CVDDGRRF--------WTKVFDVI---NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP

A0A5D3CIX9 Putative F-box protein2.7e-2137.5Show/hide
Query:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQ------PVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQRFQVCIS
        +++IF FGTSC+WTP    PN   + HGV+FNGGLYW+    Q         T V+YRLD+  E+ +K   P      ++GV N TL+        + + 
Subjt:  LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQ------PVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQRFQVCIS

Query:  CVDDGRRF--------WTKVFDVI---NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP
        C D             W+K F +    NIL     H P  ++ QL++ CEDG ILCL  G+ LI+YDP
Subjt:  CVDDGRRF--------WTKVFDVI---NILVEYSCHRP--FHSQLIRACEDGKILCLLGGLYLILYDP

A0A5D3CM94 Putative F-box protein7.8e-2144.38Show/hide
Query:  LMEIFTFGTSCK-WTP-GFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHV--IYRLDMEAEELRKSLFP-HSSLCCFIGVLNDTLFNPVRQRFQVCISC
        L+EIF FG++ + WT  GFL P+L +++HGV+FNGGLYW+ +   P  + +  IYRLD+E E L K   P H     F GV + TL+  V +  +  +  
Subjt:  LMEIFTFGTSCK-WTP-GFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHV--IYRLDMEAEELRKSLFP-HSSLCCFIGVLNDTLFNPVRQRFQVCISC

Query:  VDDGRRFWTKVFDVI---NILVEYSCHRPFH-SQL--IRACEDGKILCLLGGLYLILYDP
        + D    W K F +    N+      H+P+  SQL  I+ACEDGKILCLL GL+LILYDP
Subjt:  VDDGRRFWTKVFDVI---NILVEYSCHRPFH-SQL--IRACEDGKILCLLGGLYLILYDP

A0A6J1CQE2 F-box/kelch-repeat protein At3g06240-like3.3e-2747.71Show/hide
Query:  LMEIFTFGTSCKWT-PGFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQ-RFQVCISCVDD
        L+E FTFGT+CK T    +P ++ M+EH V+FNG LYWI   L+   T+V+YRLD+E EEL++  FP S  CC IGV N +L+  + Q R+        +
Subjt:  LMEIFTFGTSCKWT-PGFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQ-RFQVCISCVDD

Query:  GRRFWTKVFDVINILVEYSCHRPFHS---QLIRACEDGKILCLLGGLYLILYD
            WTK FDV+   + Y  HR  +    QLIRAC+DGKILCL+ GL LILY+
Subjt:  GRRFWTKVFDVINILVEYSCHRPFHS---QLIRACEDGKILCLLGGLYLILYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGATGGAGATTTTCACATTTGGCACAAGTTGCAAATGGACCCCTGGCTTTCTGCCTCCAAACTTGAGAATGAAAGAGCATGGTGTTTTCTTCAATGGAGGTCTCTATTG
GATTGTAGATGACCTACAACCAGTTGTTACACATGTCATATACCGTTTAGATATGGAAGCTGAGGAATTGAGGAAATCTCTTTTCCCCCATAGCTCTCTTTGTTGTTTCA
TTGGAGTCTTGAATGACACTCTATTTAATCCTGTGCGACAAAGATTTCAAGTATGCATATCATGTGTGGATGATGGAAGAAGATTTTGGACTAAAGTATTTGATGTTATC
AATATACTAGTTGAATATTCGTGTCATCGACCATTTCACTCTCAACTTATTAGAGCTTGTGAAGATGGGAAGATCTTATGTCTTCTTGGTGGACTCTATCTAATCTTGTA
TGACCCT
mRNA sequenceShow/hide mRNA sequence
TTGATGGAGATTTTCACATTTGGCACAAGTTGCAAATGGACCCCTGGCTTTCTGCCTCCAAACTTGAGAATGAAAGAGCATGGTGTTTTCTTCAATGGAGGTCTCTATTG
GATTGTAGATGACCTACAACCAGTTGTTACACATGTCATATACCGTTTAGATATGGAAGCTGAGGAATTGAGGAAATCTCTTTTCCCCCATAGCTCTCTTTGTTGTTTCA
TTGGAGTCTTGAATGACACTCTATTTAATCCTGTGCGACAAAGATTTCAAGTATGCATATCATGTGTGGATGATGGAAGAAGATTTTGGACTAAAGTATTTGATGTTATC
AATATACTAGTTGAATATTCGTGTCATCGACCATTTCACTCTCAACTTATTAGAGCTTGTGAAGATGGGAAGATCTTATGTCTTCTTGGTGGACTCTATCTAATCTTGTA
TGACCCT
Protein sequenceShow/hide protein sequence
LMEIFTFGTSCKWTPGFLPPNLRMKEHGVFFNGGLYWIVDDLQPVVTHVIYRLDMEAEELRKSLFPHSSLCCFIGVLNDTLFNPVRQRFQVCISCVDDGRRFWTKVFDVI
NILVEYSCHRPFHSQLIRACEDGKILCLLGGLYLILYDP