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MS018198 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018198
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold56:469061..469399
RNA-Seq ExpressionMS018198
SyntenyMS018198
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13067.1 putative F-box protein [Cucumis melo var. makuwa]3.1e-1647.86Show/hide
Query:  GVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIG--------AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--
        GVF+GTL L T   N +Y VWKM ++FSW KAF +  P    H     Q  G        A EDG+ILCLL GL+ ILY+ +T+  ++LT Q   ++K  
Subjt:  GVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIG--------AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--

Query:  -VHHIDSFDFNSLYKIL
         VHHIDSF+FNSL  IL
Subjt:  -VHHIDSFDFNSLYKIL

XP_004135796.1 putative F-box protein At1g46984 [Cucumis sativus]3.9e-1946.55Show/hide
Query:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---
        I V+NGTL L+ C  + +YH WKM EDFSW+K F + +P    H        ++ QLI   EDG ILCL  G+  ILY+  T+ +++LT Q F IK+   
Subjt:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---

Query:  VHHIDSFDFNSLYKIL
        VH I+SF FNSL+ IL
Subjt:  VHHIDSFDFNSLYKIL

XP_008450717.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]2.7e-2045.3Show/hide
Query:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--
        +GV+NGTL L+ C  + +YHVWKM EDFSW+K F + +P   LH         ++ QL+   EDG ILCL  G+  I+Y+ +T++M++LT Q F IK+  
Subjt:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--

Query:  -VHHIDSFDFNSLYKIL
          H I+SF FNSL+  L
Subjt:  -VHHIDSFDFNSLYKIL

XP_022143297.1 F-box/kelch-repeat protein At3g06240-like [Momordica charantia]2.7e-2861.4Show/hide
Query:  CSIGVFNGTLCLSTCILNLE-YHVWKMGEDFSWTKAFDVFIPTQCLHQ----SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVH
        CSIGVFNG+L L+        YHVWKM EDFSWTKAFDV +P   +H         QLI A +DG+ILCL+ GL  ILYNS+T+RM+ LTYQH NIKKVH
Subjt:  CSIGVFNGTLCLSTCILNLE-YHVWKMGEDFSWTKAFDVFIPTQCLHQ----SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVH

Query:  HIDSFDFNSLYKIL
         IDSF+F+SL+KIL
Subjt:  HIDSFDFNSLYKIL

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]1.1e-2152.99Show/hide
Query:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--
        IGV+N TL L+ C  + EYHVWKM EDFSW K F + +P    H         +  QLI A EDG ILCL  GLY ILY+ +TE  +LLT Q F IKK  
Subjt:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--

Query:  -VHHIDSFDFNSLYKIL
         V+ IDSF+FNSL+ IL
Subjt:  -VHHIDSFDFNSLYKIL

TrEMBL top hitse value%identityAlignment
A0A0A0M1M5 F-box domain-containing protein1.9e-1946.55Show/hide
Query:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---
        I V+NGTL L+ C  + +YH WKM EDFSW+K F + +P    H        ++ QLI   EDG ILCL  G+  ILY+  T+ +++LT Q F IK+   
Subjt:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---

Query:  VHHIDSFDFNSLYKIL
        VH I+SF FNSL+ IL
Subjt:  VHHIDSFDFNSLYKIL

A0A1S3BQV8 putative F-box protein At3g211201.3e-2045.3Show/hide
Query:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--
        +GV+NGTL L+ C  + +YHVWKM EDFSW+K F + +P   LH         ++ QL+   EDG ILCL  G+  I+Y+ +T++M++LT Q F IK+  
Subjt:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--

Query:  -VHHIDSFDFNSLYKIL
          H I+SF FNSL+  L
Subjt:  -VHHIDSFDFNSLYKIL

A0A5D3CIX9 Putative F-box protein1.3e-2045.3Show/hide
Query:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--
        +GV+NGTL L+ C  + +YHVWKM EDFSW+K F + +P   LH         ++ QL+   EDG ILCL  G+  I+Y+ +T++M++LT Q F IK+  
Subjt:  IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--

Query:  -VHHIDSFDFNSLYKIL
          H I+SF FNSL+  L
Subjt:  -VHHIDSFDFNSLYKIL

A0A5D3CM94 Putative F-box protein1.5e-1647.86Show/hide
Query:  GVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIG--------AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--
        GVF+GTL L T   N +Y VWKM ++FSW KAF +  P    H     Q  G        A EDG+ILCLL GL+ ILY+ +T+  ++LT Q   ++K  
Subjt:  GVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIG--------AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK--

Query:  -VHHIDSFDFNSLYKIL
         VHHIDSF+FNSL  IL
Subjt:  -VHHIDSFDFNSLYKIL

A0A6J1CQE2 F-box/kelch-repeat protein At3g06240-like1.3e-2861.4Show/hide
Query:  CSIGVFNGTLCLSTCILNLE-YHVWKMGEDFSWTKAFDVFIPTQCLHQ----SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVH
        CSIGVFNG+L L+        YHVWKM EDFSWTKAFDV +P   +H         QLI A +DG+ILCL+ GL  ILYNS+T+RM+ LTYQH NIKKVH
Subjt:  CSIGVFNGTLCLSTCILNLE-YHVWKMGEDFSWTKAFDVFIPTQCLHQ----SFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVH

Query:  HIDSFDFNSLYKIL
         IDSF+F+SL+KIL
Subjt:  HIDSFDFNSLYKIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTTGTTCTATTGGAGTCTTTAATGGTACTCTTTGTTTATCTACGTGCATCCTAAATTTAGAGTACCATGTGTGGAAGATGGGAGAAGATTTTTCATGGACTAAAGCATT
TGATGTGTTCATACCAACACAATGTTTGCATCAATCATTTCACTTTCAACTTATTGGAGCCGGTGAAGATGGGGAGATCTTGTGTCTTCTTGGTGGACTCTATTTTATCT
TGTATAACTCTAGGACGGAGAGGATGAAGCTATTGACATATCAACATTTTAACATTAAGAAAGTTCATCATATTGACTCCTTTGATTTTAATTCTCTTTACAAGATTTTA
GGAGTGAGT
mRNA sequenceShow/hide mRNA sequence
TCTTGTTCTATTGGAGTCTTTAATGGTACTCTTTGTTTATCTACGTGCATCCTAAATTTAGAGTACCATGTGTGGAAGATGGGAGAAGATTTTTCATGGACTAAAGCATT
TGATGTGTTCATACCAACACAATGTTTGCATCAATCATTTCACTTTCAACTTATTGGAGCCGGTGAAGATGGGGAGATCTTGTGTCTTCTTGGTGGACTCTATTTTATCT
TGTATAACTCTAGGACGGAGAGGATGAAGCTATTGACATATCAACATTTTAACATTAAGAAAGTTCATCATATTGACTCCTTTGATTTTAATTCTCTTTACAAGATTTTA
GGAGTGAGT
Protein sequenceShow/hide protein sequence
SCSIGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVHHIDSFDFNSLYKIL
GVS