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MS018202 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018202
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Genome locationscaffold56:503316..503598
RNA-Seq ExpressionMS018202
SyntenyMS018202
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13067.1 putative F-box protein [Cucumis melo var. makuwa]2.9e-1248.54Show/hide
Query:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN
        K QVWKM+ + SW+K FV + P  L  P        +     IKACEDGKILC+     +IL DPKT K  E+L ++ V+ +KHL V  I+SFNF+SL N
Subjt:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN

Query:  ILA
        ILA
Subjt:  ILA
XP_004134745.1 F-box protein At3g07870 [Cucumis sativus]3.2e-1146.6Show/hide
Query:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN
        K QVWKM+ + SW+K FV + P  L  P        +     IKACEDGKILC+     +IL DPKT K  E+L ++ V+ +KHL V  I++FNF+SL +
Subjt:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN

Query:  ILA
        ILA
Subjt:  ILA
XP_008439950.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]2.9e-1248.54Show/hide
Query:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN
        K QVWKM+ + SW+K FV + P  L  P        +     IKACEDGKILC+     +IL DPKT K  E+L ++ V+ +KHL V  I+SFNF+SL N
Subjt:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN

Query:  ILA
        ILA
Subjt:  ILA
XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]6.2e-1553.54Show/hide
Query:  VWKMEKDSSWVKVFVFNIPEYLLDPLDGFH-------LIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHNILA
        VWKME+D SW+K FV  +PE +   L   H       LIKACEDG ILC+     +IL DPKTE   ELL ++D E +KH+ V +I+SFNF+SLHNILA
Subjt:  VWKMEKDSSWVKVFVFNIPEYLLDPLDGFH-------LIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHNILA
XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]2.0e-1351Show/hide
Query:  QVWKMEKDSSWVKVFVFNIPEYLLDP-------LDGFHLIKACEDGKILC-----IVILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHNILA
        QVWKME++ SW+K FV + PE L  P       +     IK CEDGKILC     ++IL DPKT K+V++L N+DVE ++HL V +I+S NF+SL NILA
Subjt:  QVWKMEKDSSWVKVFVFNIPEYLLDP-------LDGFHLIKACEDGKILC-----IVILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHNILA
TrEMBL top hitse value%identityAlignment
A0A0A0KJY9 F-box domain-containing protein1.5e-1146.6Show/hide
Query:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN
        K QVWKM+ + SW+K FV + P  L  P        +     IKACEDGKILC+     +IL DPKT K  E+L ++ V+ +KHL V  I++FNF+SL +
Subjt:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN

Query:  ILA
        ILA
Subjt:  ILA
A0A0A0M1M5 F-box domain-containing protein4.5e-1150.52Show/hide
Query:  WKMEKDSSWVKVFVFNIPEYLLDPLD----GFH--LIKACEDGKILC-----IVILCDPKTEKKVELLANKDVEQKHLL-VLRIESFNFDSLHNILA
        WKME+D SW K FV  +PE +   L     G++  LIK CEDG ILC     ++IL DP T+  VE+L N+D E K  + V +IESF+F+SLHNILA
Subjt:  WKMEKDSSWVKVFVFNIPEYLLDPLD----GFH--LIKACEDGKILC-----IVILCDPKTEKKVELLANKDVEQKHLL-VLRIESFNFDSLHNILA
A0A1S3B0Q6 putative F-box protein At3g211201.4e-1248.54Show/hide
Query:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN
        K QVWKM+ + SW+K FV + P  L  P        +     IKACEDGKILC+     +IL DPKT K  E+L ++ V+ +KHL V  I+SFNF+SL N
Subjt:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN

Query:  ILA
        ILA
Subjt:  ILA
A0A5D3CIX9 Putative F-box protein2.9e-1044.9Show/hide
Query:  VWKMEKDSSWVKVFVFNIPEYLLDPLDGFH-------LIKACEDGKILC-----IVILCDPKTEKKVELLANKDVEQKH-LLVLRIESFNFDSLHNIL
        VWKM++D SW K FV  +PE +L  L   H       L+K CEDG ILC     ++I+ DPKT+ ++E+L ++D E K  +   +IESF+F+SLHN L
Subjt:  VWKMEKDSSWVKVFVFNIPEYLLDPLDGFH-------LIKACEDGKILC-----IVILCDPKTEKKVELLANKDVEQKH-LLVLRIESFNFDSLHNIL
A0A5D3CM94 Putative F-box protein1.4e-1248.54Show/hide
Query:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN
        K QVWKM+ + SW+K FV + P  L  P        +     IKACEDGKILC+     +IL DPKT K  E+L ++ V+ +KHL V  I+SFNF+SL N
Subjt:  KQQVWKMEKDSSWVKVFVFNIPEYLLDP--------LDGFHLIKACEDGKILCI-----VILCDPKTEKKVELLANKDVE-QKHLLVLRIESFNFDSLHN

Query:  ILA
        ILA
Subjt:  ILA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAACAACAGGTGTGGAAGATGGAAAAAGATTCTTCATGGGTTAAAGTTTTTGTCTTTAACATCCCAGAATATTTGTTGGATCCTCTCGATGGCTTCCATCTCATCAAAGC
CTGCGAAGATGGAAAGATCTTGTGTATTGTTATCTTGTGTGACCCAAAAACTGAGAAGAAGGTGGAGTTATTGGCGAACAAAGATGTTGAACAAAAACATTTATTGGTTC
TTCGGATCGAATCCTTCAATTTCGATTCTCTCCACAACATTTTAGCACAGACTAAG
mRNA sequenceShow/hide mRNA sequence
AAACAACAGGTGTGGAAGATGGAAAAAGATTCTTCATGGGTTAAAGTTTTTGTCTTTAACATCCCAGAATATTTGTTGGATCCTCTCGATGGCTTCCATCTCATCAAAGC
CTGCGAAGATGGAAAGATCTTGTGTATTGTTATCTTGTGTGACCCAAAAACTGAGAAGAAGGTGGAGTTATTGGCGAACAAAGATGTTGAACAAAAACATTTATTGGTTC
TTCGGATCGAATCCTTCAATTTCGATTCTCTCCACAACATTTTAGCACAGACTAAG
Protein sequenceShow/hide protein sequence
KQQVWKMEKDSSWVKVFVFNIPEYLLDPLDGFHLIKACEDGKILCIVILCDPKTEKKVELLANKDVEQKHLLVLRIESFNFDSLHNILAQTK