CuGenDBv2

Gene ID	MS018260
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein RDM1-like
Genome location	scaffold23:13245..13919
RNA-Seq Expression	MS018260
Synteny	MS018260
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]

7.2e-89

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSV+PF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022159295.1 protein RDM1-like [Momordica charantia]

2.3e-95

98.85

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSV+PFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022951070.1 protein RDM1-like [Cucurbita moschata]

7.2e-89

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSV+PF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_022974457.1 protein RDM1-like [Cucurbita maxima]

4.7e-88

89.66

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSE +L KRAEMYQEYMKQIPIPA+RGSV+PFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]

3.2e-89

90.23

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TS+G+L KRAEMYQEYMKQIPIPAHRGSV+PFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E3H6 protein RDM1-like

1.1e-95

98.85

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSV+PFTTWVGLGKSIKQLYSQPL 
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GHM4 protein RDM1-like

3.5e-89

90.23

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSV+PF TW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1GV10 protein RDM1

5.6e-87

89.08

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPSMDD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSV+PFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1IGA1 protein RDM1-like

2.3e-88

89.66

Show/hide

Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSE +L KRAEMYQEYMKQIPIPA+RGSV+PFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

1.2e-86

88.51

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Query:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE G QNDGFEFKPS+DD KIPAKE+T+EG+L KRAEMYQEYMKQI IPA RGSV+PFTTW+GLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLH

Query:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL
        YLTNI LKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSDPMH AYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

7.6e-49

54.6

Show/hide

Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS++PFT+WVGL  S+KQLY QPLHYLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

5.4e-50

54.6

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Query:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
        +++  SG+S SSD +        E       L    +++  EG L +RAEMYQ+YMKQ+PIP +RGS++PFT+WVGL  S+KQLY QPLHYLTN+ L++W
Subjt:  VDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW

Query:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ
        DQ RFG+  E + LD++IHP+KAEATIW+VEEIHR T SH H+A LW SDPM+H+++D IFP+
Subjt:  DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQ

Sequences

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CDS sequence

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ATGAAGAGGCCAATGCCATGGAACGAACAAGTGGATATTATTTCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGTCAAAATGATGGGTTTGAGTTCAAGCC
TTCCATGGATGATTTGAAAATCCCTGCCAAAGAAATCACATCTGAAGGTTTGTTGACTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATACCAATCCCAGCAC
ACCGTGGTTCTGTAGTACCATTTACAACATGGGTGGGATTGGGCAAATCTATAAAGCAGCTATATAGTCAGCCTTTGCATTACCTGACTAATATTCAACTAAAACAGTGG
GATCAATTAAGATTCGGAAGTTCGGATGAATATAAGCCATTGGATACTTTAATTCATCCGAGTAAAGCTGAAGCAACCATATGGATGGTTGAAGAGATTCATAGGCGCAC
CTCGTCCCATCATCATGTTGCTAAACTCTGGCTATCAGACCCAATGCACCATGCGTATGTTGACTCCATTTTCCCCCAACTA

mRNA sequence

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Protein sequence

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MKRPMPWNEQVDIISSGESSSSDSEIGGQNDGFEFKPSMDDLKIPAKEITSEGLLTKRAEMYQEYMKQIPIPAHRGSVVPFTTWVGLGKSIKQLYSQPLHYLTNIQLKQW
DQLRFGSSDEYKPLDTLIHPSKAEATIWMVEEIHRRTSSHHHVAKLWLSDPMHHAYVDSIFPQL

MS018260 (gene) of Bitter gourd (TR) v1 genome