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MS018262 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018262
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold23:24282..24482
RNA-Seq ExpressionMS018262
SyntenyMS018262
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067918.1 hypothetical protein E6C27_scaffold138G00850 [Cucumis melo var. makuwa]4.5e-0744.44Show/hide
Query:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR
        ++V+FF WQVLLG+VNT+DR+ R  +  +G    +LC+ A EDL+HL   CQ+ + +W  F +
Subjt:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR

TYK04295.1 serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X2 [Cucumis melo var. makuwa]4.5e-0744.44Show/hide
Query:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR
        ++V+FF WQVLLG+VNT+DR+ R  +  +G    +LC+ A EDL+HL   CQ+ + +W  F +
Subjt:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR

TYK06215.1 peroxin Pex14 isoform X3 [Cucumis melo var. makuwa]7.7e-0747.69Show/hide
Query:  IPKKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR
        +PKKV+FF WQ LLG+VNT+DR+ R  S   G     L + A EDL+H  W CQ+ + +W  F R
Subjt:  IPKKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR

TYK29954.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-0847.69Show/hide
Query:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFRFF
        KKV+FF WQVLL + N +DR+ R       S   +LCR A EDL+HLLW CQ+ + +W  F + F
Subjt:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFRFF

XP_038887741.1 epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Benincasa hispida]2.0e-0747.76Show/hide
Query:  IPKKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFRFF
        I K V FF WQ L G+VNTM  IQ   SF LG QW  LC   +E+L+H+   CQF    W  F   F
Subjt:  IPKKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFRFF

TrEMBL top hitse value%identityAlignment
A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein3.8e-0747.54Show/hide
Query:  IPKKVKFFGWQVLLGKVNTMDRIQ-RIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLW
        IP+K KFF W ++  K+NTMD+IQ R  S  L   W + CRS+ ED+ HL   C F ++LW
Subjt:  IPKKVKFFGWQVLLGKVNTMDRIQ-RIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLW

A0A5A7VJE4 zf-RVT domain-containing protein2.2e-0744.44Show/hide
Query:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR
        ++V+FF WQVLLG+VNT+DR+ R  +  +G    +LC+ A EDL+HL   CQ+ + +W  F +
Subjt:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR

A0A5D3BYR2 Serine/threonine-protein phosphatase 4 regulatory subunit 3-like isoform X22.2e-0744.44Show/hide
Query:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR
        ++V+FF WQVLLG+VNT+DR+ R  +  +G    +LC+ A EDL+HL   CQ+ + +W  F +
Subjt:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR

A0A5D3C4A7 Peroxin Pex14 isoform X33.8e-0747.69Show/hide
Query:  IPKKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR
        +PKKV+FF WQ LLG+VNT+DR+ R  S   G     L + A EDL+H  W CQ+ + +W  F R
Subjt:  IPKKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFR

A0A5D3E255 Reverse transcriptase3.4e-0847.69Show/hide
Query:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFRFF
        KKV+FF WQVLL + N +DR+ R       S   +LCR A EDL+HLLW CQ+ + +W  F + F
Subjt:  KKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFRFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCCAAAGAAGGTTAAGTTCTTTGGGTGGCAAGTCTTACTTGGGAAAGTCAATACCATGGATCGTATTCAGAGGATATATTCCTTTTGTCTAGGCTCGCAGTGGCTCGT
TCTCTGTAGGAGTGCCACGGAAGACCTCGAGCATTTGTTGTGGACTTGTCAGTTTGTGCAGGATTTATGGCTTCGGTTCTTTAGGTTTTTT
mRNA sequenceShow/hide mRNA sequence
ATTCCAAAGAAGGTTAAGTTCTTTGGGTGGCAAGTCTTACTTGGGAAAGTCAATACCATGGATCGTATTCAGAGGATATATTCCTTTTGTCTAGGCTCGCAGTGGCTCGT
TCTCTGTAGGAGTGCCACGGAAGACCTCGAGCATTTGTTGTGGACTTGTCAGTTTGTGCAGGATTTATGGCTTCGGTTCTTTAGGTTTTTT
Protein sequenceShow/hide protein sequence
IPKKVKFFGWQVLLGKVNTMDRIQRIYSFCLGSQWLVLCRSATEDLEHLLWTCQFVQDLWLRFFRFF