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MS018286 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018286
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold23:426868..427150
RNA-Seq ExpressionMS018286
SyntenyMS018286
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU26239.1 hypothetical protein TSUD_224300 [Trifolium subterraneum]1.8e-1752.27Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL
        I+++V  RL+NW A +LSFAGR TL KS+IQA+P Y M     P     ++D+ CR+F+ G T    +IHLISWDKI  PK+EGGLG+
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL

XP_016164673.1 uncharacterized protein LOC107607211 [Arachis ipaensis]1.4e-1747.73Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFPGCR-KKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL
        I+N++++RLN+W A+SLS AGRTTLVKS++ ++P Y MH    P      +D++CRNF+ G T    ++HL++W KI  PK+ GGLG+
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFPGCR-KKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL

XP_019150780.1 PREDICTED: uncharacterized protein LOC109147628 [Ipomoea nil]6.1e-1848.42Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN
        I++++  +L NW A++LS AGR TLV++ + +IPTY M     P    K +D++CRNFL GHT    +IH +SWD I +PK  GGLGL   QDFN
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN

XP_025664883.1 uncharacterized protein LOC112763420 [Arachis hypogaea]1.4e-1747.73Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFPGCR-KKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL
        I+N++++RLN+W A+SLS AGRTTLVKS++ ++P Y MH    P      +D++CRNF+ G T    ++HL++W KI  PK+ GGLG+
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFPGCR-KKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL

XP_025679132.1 uncharacterized protein LOC112779089 [Arachis hypogaea]8.0e-1847.37Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN
        ++N++N RLNNW A++LS AGRTTLVKSI+ ++P+Y +     P      +D+ C NFL G T    ++H++SWDKI +PK  GGLGL   +D N
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN

TrEMBL top hitse value%identityAlignment
A0A151TUT4 Putative ribonuclease H protein At1g65750 family2.1e-1646.32Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN
        +++ VN RL+ W  ++LSFAGR TL KS+I+AIP+Y M     P     ++D+LCR+FL G T +  +IH ISW+ I +PK +GGLGL   +  N
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN

A0A151UC50 Putative ribonuclease H protein At1g65750 (Fragment)2.5e-1749.44Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP--GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL
        ++ +VN +L+ W   +LSF GR TL KS++ AIP+Y M I  FP   C  ++D+ CR+FL GHTS + +IH ++W KI +PK EGGLGL
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP--GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL

A0A2I0ICF9 Reverse transcriptase domain-containing protein3.6e-1643.16Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFPG-CRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN
        I+N+V +RL+ ++  +LS AGR TL KS++QA+ +Y MH  + P      L++LCR+F+ GH+S++ +IHL++W  +T+P   GGLGL     FN
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFPG-CRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN

A0A2I4E9H8 uncharacterized protein LOC1089875822.8e-1644.21Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN
        ++++   ++ NW    LS AG+  L+KS++QAIPTYAM IFR P    K+LDQLCR F  G T  +++I  + W  ++R K +GGLG   F  FN
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN

A0A2Z6N471 Uncharacterized protein8.7e-1852.27Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL
        I+++V  RL+NW A +LSFAGR TL KS+IQA+P Y M     P     ++D+ CR+F+ G T    +IHLISWDKI  PK+EGGLG+
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.6e-1640Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN
        I+ RV+ R++ W   +LSFAGR TL K+++ ++P ++M     P     +LDQL R FL G T+ + + HL+ W K+  PK+EGGLG+   +  N
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-1433.68Show/hide
Query:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN
        +V ++ +R+  W+A  LSFAGR  L+ S+I ++  + M  FR P  C K++D +C +FL        +   ++W  +  PK EGGLG+   ++ N
Subjt:  IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFP-GCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGTGAATAGAGTAAATATGAGATTGAATAATTGGTCAGCTGCTTCTCTTTCCTTTGCAGGTCGGACTACATTAGTAAAATCTATCATTCAAGCCATACCCACTTATGC
AATGCATATCTTTCGGTTTCCAGGGTGTCGTAAGAAACTGGACCAATTATGTAGAAATTTTCTTTTGGGTCATACTAGTTCTAGAGCTCGGATTCACCTAATTAGTTGGG
ATAAGATTACAAGGCCTAAGAGGGAAGGGGGTCTTGGTTTACATATATTTCAAGACTTTAAT
mRNA sequenceShow/hide mRNA sequence
ATAGTGAATAGAGTAAATATGAGATTGAATAATTGGTCAGCTGCTTCTCTTTCCTTTGCAGGTCGGACTACATTAGTAAAATCTATCATTCAAGCCATACCCACTTATGC
AATGCATATCTTTCGGTTTCCAGGGTGTCGTAAGAAACTGGACCAATTATGTAGAAATTTTCTTTTGGGTCATACTAGTTCTAGAGCTCGGATTCACCTAATTAGTTGGG
ATAAGATTACAAGGCCTAAGAGGGAAGGGGGTCTTGGTTTACATATATTTCAAGACTTTAAT
Protein sequenceShow/hide protein sequence
IVNRVNMRLNNWSAASLSFAGRTTLVKSIIQAIPTYAMHIFRFPGCRKKLDQLCRNFLLGHTSSRARIHLISWDKITRPKREGGLGLHIFQDFN