CuGenDBv2

Gene ID	MS018321
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	scaffold250:134789..134929
RNA-Seq Expression	MS018321
Synteny	MS018321
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	IPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal IPR033966 - RuBisCO IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAN63271.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Ampelocera hottlei]

5.1e-13

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHML + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

AEQ37121.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Ginkgo biloba]

5.1e-13

78.72

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVS+ GVLPV+  GIHVWHM  + EIFGDDSVLQFGRGT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

MBA0679439.1 hypothetical protein [Gossypium aridum]

1.3e-13

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R+IYFTQDWVS+LGVLPVS EG HVWHML +IEIFGDDSVLQ+G  T
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

QCE05905.1 ribulose-bisphosphate carboxylase large chain [Vigna unguiculata]

5.1e-13

78.72

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+ EGIH+WHM  + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

TYH45954.1 hypothetical protein ES332_D11G301900v1 [Gossypium tomentosum]

2.3e-13

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVS+ GVLPV+ EGIHVWHM  +IEIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

TrEMBL top hits

e value

%identity

Alignment

A0A5D2IUB2 Ribulose bisphosphate carboxylase large chain

1.1e-13

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVS+ GVLPV+ EGIHVWHM  +IEIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

A0A7J8WY09 RuBisCO_large domain-containing protein (Fragment)

6.5e-14

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R+IYFTQDWVS+LGVLPVS EG HVWHML +IEIFGDDSVLQ+G  T
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

B9S1B6 Ribulose bisphosphate carboxylase large chain

2.5e-13

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHM  +IEIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Q33032 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-13

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHML + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Q8HUZ6 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-13

80.85

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHML + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

SwissProt top hits

e value

%identity

Alignment

Q05985 Ribulose bisphosphate carboxylase large chain (Fragment)

1.5e-15

78.72

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHM  ++EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Q31809 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-15

78.72

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHM  + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Q31946 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-15

78.72

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHM  + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Q32256 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-15

78.72

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHM  + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Q32271 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-15

78.72

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R IYFTQDWVSL GVLPV+  GIHVWHM  + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

8.9e-16

76.6

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Query:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT
        R I+FTQDWVSL GVLPV+  GIHVWHM  + EIFGDDSVLQFG GT
Subjt:  RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

Sequences

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CDS sequence

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CGCAATATTTATTTCACTCAAGATTGGGTTTCTTTACTAGGTGTTCTGCCAGTGTCTTTCGAAGGAATTCACGTTTGGCATATGCTTGTTATAATCGAGATTTTTGGAGA
TGATTCTGTACTACAATTTGGTAGAGGCACC

mRNA sequence

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CGCAATATTTATTTCACTCAAGATTGGGTTTCTTTACTAGGTGTTCTGCCAGTGTCTTTCGAAGGAATTCACGTTTGGCATATGCTTGTTATAATCGAGATTTTTGGAGA
TGATTCTGTACTACAATTTGGTAGAGGCACC

Protein sequence

Show/hide protein sequence

RNIYFTQDWVSLLGVLPVSFEGIHVWHMLVIIEIFGDDSVLQFGRGT

MS018321 (gene) of Bitter gourd (TR) v1 genome