CuGenDBv2

Gene ID	MS018364
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c oxidase subunit 2
Genome location	scaffold342:276223..276424
RNA-Seq Expression	MS018364
Synteny	MS018364
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0022900 - electron transport chain (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0070469 - respirasome (cellular component) GO:0003677 - DNA binding (molecular function) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0005507 - copper ion binding (molecular function)
InterPro domains	IPR011759 - Cytochrome C oxidase subunit II, transmembrane domain IPR036257 - Cytochrome C oxidase subunit II, transmembrane domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AEN56105.1 cytochrome c oxidase subunit 2 [Cucumis melo subsp. melo]

1.5e-21

86.76

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILIFVFVSRILVR LWHFHY K KI Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

GAV85170.1 COX2 domain-containing protein/COX2_TM domain-containing protein [Cephalotus follicularis]

1.9e-21

86.76

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILIFVFV RILVR LWHFHYKKN I Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

XP_022150206.1 uncharacterized protein LOC111018435 [Momordica charantia]

1.6e-23

92.65

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        LDLH DIFFFFILIFVFVSRILVRGLWHFHYKKNKI Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

XP_023553509.1 uncharacterized protein LOC111810906 isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-21

85.29

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF IL+FVFVSRILVR LWHFHYK+N+I Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

YP_009913658.1 cytochrome c oxidase subunit 2 [Luffa acutangula]

6.5e-22

86.76

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILIFVFVSRILVR LWHFHY+KN+I Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

TrEMBL top hits

e value

%identity

Alignment

A0A3S9JIH4 Cytochrome c oxidase subunit 2

7.0e-22

86.76

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILIFVFVSRILVR LWHFHY K KI Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

A0A5D3BYL8 Cytochrome c oxidase subunit 2

9.2e-22

86.76

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILIFVFVSRILVR LWHFHY K KI QKIV GTTIEILWTIFPSIIPMFI IPSF L
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

A0A6J1DAS7 Cytochrome c oxidase subunit 2

7.5e-24

92.65

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        LDLH DIFFFFILIFVFVSRILVRGLWHFHYKKNKI Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

A0A7D6C0E1 Cytochrome c oxidase subunit 2

3.2e-22

86.76

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILIFVFVSRILVR LWHFHY+KN+I Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

G3EU21 Cytochrome c oxidase subunit 2

7.0e-22

86.76

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILIFVFVSRILVR LWHFHY K KI Q+IV GTTIEILWTIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

SwissProt top hits

e value

%identity

Alignment

P05491 Cytochrome c oxidase subunit 2

1.0e-22

85.29

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFVSRILVR LWHFHYKKN I Q+IV GTTIEIL TIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

P08744 Cytochrome c oxidase subunit 2

1.0e-22

85.29

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFVSRILVR LWHFHYKKN I Q+IV GTTIEIL TIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

P27168 Cytochrome c oxidase subunit 2

1.2e-21

83.82

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFVSRILVR LWHFH KKN I Q+IV GTTIEIL TIFPSIIPMFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

P93285 Cytochrome c oxidase subunit 2

1.5e-21

82.35

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFV  ILVR LWHFHYKKN I Q+IV GTTIEILWTIFPSII MFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

P98012 Cytochrome c oxidase subunit 2

2.2e-20

80.88

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFVS ILVR LWHFHYKKN I Q+IV GTTIEI+ TIFPSII MFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

Arabidopsis top hits

e value

%identity

Alignment

AT2G07695.1 Cytochrome C oxidase subunit II-like, transmembrane domain

1.9e-19

76.47

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFV  ILVR LWHFHYKKN I Q+IV GTTIEIL TIFP  I +FIV PSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

ATMG00160.1 cytochrome oxidase 2

2.6e-21

80.88

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFV  ILVR LWHFHYKKN I Q+IV GTTIEIL TIFPSII MFI IPSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

ATMG01280.1 Cytochrome C oxidase subunit II-like, transmembrane domain

1.9e-19

76.47

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Query:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL
        +DLHHDIFFF ILI VFV  ILVR LWHFHYKKN I Q+IV GTTIEIL TIFP  I +FIV PSFAL
Subjt:  LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIV-GTTIEILWTIFPSIIPMFIVIPSFAL

Sequences

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CDS sequence

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CTAGACTTACATCATGATATCTTTTTCTTCTTCATTCTGATTTTTGTTTTCGTATCACGGATCTTGGTTCGCGGTTTATGGCATTTCCACTATAAAAAAAATAAAATACA
GCAAAAGATTGTTGGAACTACTATCGAGATTCTTTGGACCATTTTTCCTAGTATCATTCCGATGTTCATTGTTATACCGTCATTTGCTCTC

mRNA sequence

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Protein sequence

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LDLHHDIFFFFILIFVFVSRILVRGLWHFHYKKNKIQQKIVGTTIEILWTIFPSIIPMFIVIPSFAL

MS018364 (gene) of Bitter gourd (TR) v1 genome