; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS018402 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018402
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S19
Genome locationscaffold342:684065..685703
RNA-Seq ExpressionMS018402
SyntenyMS018402
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022134553.1 40S ribosomal protein S19-3 [Momordica charantia]4.9e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVD KGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022150295.1 40S ribosomal protein S19-3-like [Momordica charantia]2.2e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHIL QLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]4.9e-7598.6Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]1.1e-7497.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A6J1C2B0 40S ribosomal protein S19-32.4e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVD KGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1D839 40S ribosomal protein S19-3-like1.1e-7599.3Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHIL QLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1EBL3 40S ribosomal protein S19-3-like2.4e-7598.6Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTL0 40S ribosomal protein S19-3-like2.4e-7598.6Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTW8 40S ribosomal protein S19-3-like5.3e-7597.9Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAI
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S191.4e-6482.14Show/hide
Query:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIA
        +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+ARKIYLR G+GVG F++IYGG QRNGSRPPHFCKSSGAI+
Subjt:  ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIA

Query:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ+M I+DVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S193.8e-4658.21Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +Y+R   G+G+F++IYGG +R G+ P HFCK++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHIL

Query:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ + IV+ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-31.9e-6986.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-27.8e-6887.05Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAASMARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-12.4e-6985.31Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein1.7e-7085.31Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein5.6e-6987.05Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAASMARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG I
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein1.3e-7086.62Show/hide
Query:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI
        MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG +
Subjt:  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTGCTAAGACCGTCAAGGATGTATCTCCTCACGAGTTCGTCAAGGCCTATGCCGCTCATCTCAAGCGATCTGGAAAGGTTGAACTCCCACCATGGACAGATAT
AGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGG
GAGCATTTAAGCGTATTTATGGTGGAAGCCAGAGGAATGGAAGTCGCCCACCACACTTCTGCAAAAGCAGCGGTGCTATTGCCCGTCACATTTTGCAACAATTGCAGGAG
ATGAACATTGTTGATGTTGACCCGAAGGGTGGAAGGAGAATCACTTCAAGCGGTCGACGGGATCTCGATCAAGTCGCTGGACGGATTGTTGTTGCCCCG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTGCTAAGACCGTCAAGGATGTATCTCCTCACGAGTTCGTCAAGGCCTATGCCGCTCATCTCAAGCGATCTGGAAAGGTTGAACTCCCACCATGGACAGATAT
AGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGG
GAGCATTTAAGCGTATTTATGGTGGAAGCCAGAGGAATGGAAGTCGCCCACCACACTTCTGCAAAAGCAGCGGTGCTATTGCCCGTCACATTTTGCAACAATTGCAGGAG
ATGAACATTGTTGATGTTGACCCGAAGGGTGGAAGGAGAATCACTTCAAGCGGTCGACGGGATCTCGATCAAGTCGCTGGACGGATTGTTGTTGCCCCG
Protein sequenceShow/hide protein sequence
MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQE
MNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP