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MS018411 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018411
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTetratricopeptide repeat (TPR)-like superfamily protein
Genome locationscaffold342:770558..771049
RNA-Seq ExpressionMS018411
SyntenyMS018411
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057606.1 hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa]1.2e-3760.43Show/hide
Query:  QWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSHQLKLPMSPMEENCCKWVQQLDS
        QWQP   P VAP PLCASQIAL NYAC  LPY+ +LP PP   SL  NH++Q             P H H H H   H  K+P+SP+EENCCKWVQQ+DS
Subjt:  QWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSHQLKLPMSPMEENCCKWVQQLDS

Query:  VCVCGLLSRLPAFLERPQHNFSITVGG--SCDATYSCGG
         CVC LLSRLPAFL+RP HNFS+ +GG  SC+ATYSCGG
Subjt:  VCVCGLLSRLPAFLERPQHNFSITVGG--SCDATYSCGG

KAG7014427.1 hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3354.97Show/hide
Query:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS
        M R  IL+  + LFL L+ +TE+QWQP   P+VAP P C SQIAL N AC MLPY+ +  +PPS  SL DNHE+              P+H+H   H   
Subjt:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS

Query:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGS
        HQ ++ +SPMEENCCKWVQQLDS C+C LLSRLPAFLERPQH  S +VGG+
Subjt:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGS

XP_023548911.1 uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo]2.8e-4259.01Show/hide
Query:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS
        M R  IL+  + LFL L+ +TE+QWQP   P+VAP P C SQIAL N AC MLPY+ +  +PPS  SL DNHE+            P P+HRH H H   
Subjt:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS

Query:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGG
        HQ ++ +SPMEENCCKWVQQLDS C+C LLSRLPAFLERPQH  S +VGGSC+AT+SCGGG
Subjt:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGG

XP_031744964.1 uncharacterized protein LOC116405195 [Cucumis sativus]2.8e-4257.5Show/hide
Query:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS
        M R  IL+L + LFL L+T++ESQWQP   P VAP PLCASQI L NYAC  LPY  + P PP   SL +N ++Q             P H H H H   
Subjt:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS

Query:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG
        H  K+P++P+EENCCKWVQQ+DS CVC LLSRLPAFL+RP HNFS+T+GGSC+ATY CGG
Subjt:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG

XP_038899044.1 uncharacterized protein LOC120086453 [Benincasa hispida]4.9e-5568.29Show/hide
Query:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS
        M R  IL+  + LFL L+T+TE QWQP   P+VAP PLCASQIAL NYAC MLPY+ VLP PP   SL DNHE+Q         P+ R  H H+H H   
Subjt:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS

Query:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGGIKI
        HQ K+P+SPMEENCCKWVQQLDS C+CGLLSRLPAFLERPQHNFS+TVGGSCDATYSCGGGIKI
Subjt:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGGIKI

TrEMBL top hitse value%identityAlignment
A0A0A0KAN7 Uncharacterized protein1.4e-4257.5Show/hide
Query:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS
        M R  IL+L + LFL L+T++ESQWQP   P VAP PLCASQI L NYAC  LPY  + P PP   SL +N ++Q             P H H H H   
Subjt:  MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQS

Query:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG
        H  K+P++P+EENCCKWVQQ+DS CVC LLSRLPAFL+RP HNFS+T+GGSC+ATY CGG
Subjt:  HQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG

A0A1S3TMG4 uncharacterized protein LOC1067568581.2e-2745.34Show/hide
Query:  ILVLVLALFLVLVTNTESQWQPPEVPEVAPP-PLCASQIALVNYACGMLPY---TPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSH
        ++ L L L L LVT TESQ +PP +    PP PLC SQ ALVNYAC  LP+    P   +PP P     + ET           H   HHRH HRH   H
Subjt:  ILVLVLALFLVLVTNTESQWQPPEVPEVAPP-PLCASQIALVNYACGMLPY---TPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSH

Query:  QLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGGI
        +     +P E+NCC+W +++DS CVC LL RLP FL RP H +++ +G +C+ TYSCG  I
Subjt:  QLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGGI

A0A1S3Z0Z7 uncharacterized protein LOC1077818422.1e-2747.13Show/hide
Query:  VLVLALFLVL-VTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSHQLKLP
        ++++ +FLVL  + + SQW P   P +   PLCASQ ALVN+AC +LPYTP    PPSPP          P PS  P P P P  RHRHRH + H  K  
Subjt:  VLVLALFLVL-VTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSHQLKLP

Query:  MSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGGIK
         +P+EE CC+W++Q+DS C+C LL  LP FL RP H +++ V  SC+ T+ CG  IK
Subjt:  MSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGGIK

A0A5A7UTY5 Uncharacterized protein5.9e-3860.43Show/hide
Query:  QWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSHQLKLPMSPMEENCCKWVQQLDS
        QWQP   P VAP PLCASQIAL NYAC  LPY+ +LP PP   SL  NH++Q             P H H H H   H  K+P+SP+EENCCKWVQQ+DS
Subjt:  QWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSHQLKLPMSPMEENCCKWVQQLDS

Query:  VCVCGLLSRLPAFLERPQHNFSITVGG--SCDATYSCGG
         CVC LLSRLPAFL+RP HNFS+ +GG  SC+ATYSCGG
Subjt:  VCVCGLLSRLPAFLERPQHNFSITVGG--SCDATYSCGG

A0A6P4AZX7 uncharacterized protein DDB_G02727241.9e-2848.98Show/hide
Query:  LVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPH-HRHRHRHEQSHQLKLPMSPMEEN
        L+LV   ESQ  PP    VAP PLCASQ AL +YAC ++P+TP+ P PPSPPS           P      H   H HRH H H   H+ +   SP EE+
Subjt:  LVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPH-HRHRHRHEQSHQLKLPMSPMEEN

Query:  CCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG
        CC+W++QLDS CVC +L  LP FL RP H +S+ VG +CD T+SC G
Subjt:  CCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G63095.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-1546.67Show/hide
Query:  HPRPHHRHRHRHEQSHQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG
        H R HHRH HRH   H+ +   +  ++ CCKW++Q+D+ CVC LL RLP  L +P HN+++ V  SC  T+ CGG
Subjt:  HPRPHHRHRHRHEQSHQLKLPMSPMEENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGGTCCGGGATCCTCGTACTGGTATTAGCGCTGTTCTTGGTGCTGGTTACCAACACAGAGAGTCAATGGCAGCCGCCAGAGGTGCCAGAGGTTGCTCCCCCTCC
GCTCTGCGCCTCCCAGATAGCGCTAGTAAACTATGCCTGCGGAATGCTGCCTTACACCCCAGTGCTGCCAACTCCGCCTTCACCACCATCACTCTTTGATAACCATGAAA
CCCAATGCCCTCAGCCCAGCATCCGCCCCCGCCCCCACCCTCGCCCCCACCACAGGCACCGGCACAGACACGAGCAGAGTCACCAGCTCAAGCTCCCGATGTCACCAATG
GAGGAGAATTGTTGCAAGTGGGTGCAGCAGTTGGATAGTGTATGCGTATGCGGGCTGCTATCCCGCTTGCCCGCCTTCCTCGAGAGGCCTCAGCATAACTTTTCTATTAC
TGTTGGCGGTTCTTGTGATGCTACATACTCATGTGGAGGAGGGATCAAAATC
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGGTCCGGGATCCTCGTACTGGTATTAGCGCTGTTCTTGGTGCTGGTTACCAACACAGAGAGTCAATGGCAGCCGCCAGAGGTGCCAGAGGTTGCTCCCCCTCC
GCTCTGCGCCTCCCAGATAGCGCTAGTAAACTATGCCTGCGGAATGCTGCCTTACACCCCAGTGCTGCCAACTCCGCCTTCACCACCATCACTCTTTGATAACCATGAAA
CCCAATGCCCTCAGCCCAGCATCCGCCCCCGCCCCCACCCTCGCCCCCACCACAGGCACCGGCACAGACACGAGCAGAGTCACCAGCTCAAGCTCCCGATGTCACCAATG
GAGGAGAATTGTTGCAAGTGGGTGCAGCAGTTGGATAGTGTATGCGTATGCGGGCTGCTATCCCGCTTGCCCGCCTTCCTCGAGAGGCCTCAGCATAACTTTTCTATTAC
TGTTGGCGGTTCTTGTGATGCTACATACTCATGTGGAGGAGGGATCAAAATC
Protein sequenceShow/hide protein sequence
MARSGILVLVLALFLVLVTNTESQWQPPEVPEVAPPPLCASQIALVNYACGMLPYTPVLPTPPSPPSLFDNHETQCPQPSIRPRPHPRPHHRHRHRHEQSHQLKLPMSPM
EENCCKWVQQLDSVCVCGLLSRLPAFLERPQHNFSITVGGSCDATYSCGGGIKI