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MS018420 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018420
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc CCHC-type-like protein
Genome locationscaffold476:147828..148058
RNA-Seq ExpressionMS018420
SyntenyMS018420
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.1e-2870.13Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        LGN +G FEDV+ + ++ CWGS LR+RV  D+ KPL RGIKLNLDGPMGG WIPIQYERLPDF +HCGR+DH +KDC
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.5e-2768.83Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        LGN +G F DVDC+E    WG+SLRIRV +DI+KPLRRGIK+N+DGPMGG WIPIQYERLPDFC+ CG + H+  DC
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.6e-2677.94Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCG
        LGN LG FE+ DCD+ +  WGS+LR+RV LDISKPLRRGIKLNLDGP+GG WIPIQYERLPDFC+HCG
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCG

XP_028117212.1 uncharacterized protein LOC114314884 [Camellia sinensis]1.9e-1753.25Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        LGN LG F D++  +    WG +L IR+ ++I KPLRRG+KL L G    VWI +QYERLP+FCFHCG + H++ DC
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

XP_038894015.1 uncharacterized protein LOC120082783 [Benincasa hispida]1.6e-1649.35Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        LGN +GTF +VD DE+D CW  SL IR+T+DI+ PL  G+K   +      WI I+YER+PDFC+ C  + H +K+C
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

TrEMBL top hitse value%identityAlignment
A0A2K3MPT1 Cysteine desulfurase mitochondrial-like6.6e-1652.56Show/hide
Query:  LGNVLGTFEDVDCDESDC-CWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        LGN+LGTFE++D    DC   G  LRIRV++D+ KPL+RG KL+  G    +W+  +YERLP+FCF CGR+ H ++DC
Subjt:  LGNVLGTFEDVDCDESDC-CWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

A0A6J1BSZ1 uncharacterized protein LOC1110054812.0e-2870.13Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        LGN +G FEDV+ + ++ CWGS LR+RV  D+ KPL RGIKLNLDGPMGG WIPIQYERLPDF +HCGR+DH +KDC
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

A0A6J1DU55 uncharacterized protein LOC1110231351.7e-2768.83Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        LGN +G F DVDC+E    WG+SLRIRV +DI+KPLRRGIK+N+DGPMGG WIPIQYERLPDFC+ CG + H+  DC
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

A0A6J1DX30 uncharacterized protein LOC1110248743.2e-2677.94Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCG
        LGN LG FE+ DCD+ +  WGS+LR+RV LDISKPLRRGIKLNLDGP+GG WIPIQYERLPDFC+HCG
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCG

A0A6P9EID8 uncharacterized protein LOC1183488563.0e-1651.95Show/hide
Query:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
        +GN +G  E+VD ++S+  WG  LRIRV ++IS+PL RGI + L G  G VWI   YERLP+FC+ CG++ H  KDC
Subjt:  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAGGAAATGTTCTGGGAACTTTCGAAGATGTTGACTGTGATGAATCAGACTGCTGTTGGGGATCCAGTCTCAGAATTCGAGTAACGCTGGACATATCCAAACCCCTTAG
AAGGGGAATCAAACTCAATCTTGATGGTCCTATGGGAGGTGTTTGGATCCCCATCCAATATGAGCGTCTTCCTGACTTCTGTTTTCATTGTGGCAGGGTGGACCATACTA
TCAAGGATTGT
mRNA sequenceShow/hide mRNA sequence
TTAGGAAATGTTCTGGGAACTTTCGAAGATGTTGACTGTGATGAATCAGACTGCTGTTGGGGATCCAGTCTCAGAATTCGAGTAACGCTGGACATATCCAAACCCCTTAG
AAGGGGAATCAAACTCAATCTTGATGGTCCTATGGGAGGTGTTTGGATCCCCATCCAATATGAGCGTCTTCCTGACTTCTGTTTTCATTGTGGCAGGGTGGACCATACTA
TCAAGGATTGT
Protein sequenceShow/hide protein sequence
LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC