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MS018421 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018421
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold476:150116..150286
RNA-Seq ExpressionMS018421
SyntenyMS018421
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI09819.1 hypothetical protein PRUPE_4G011200 [Prunus persica]7.5e-1162.26Show/hide
Query:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        QMFPTKA G DG PALF+QKYW IVG K  + CL +LN  G +R +N T IAL
Subjt:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]7.5e-1162.26Show/hide
Query:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        QMFPTKA G DG PALF+QKYW IVG K  + CL +LN  G +R +N T IAL
Subjt:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

XP_010689378.1 PREDICTED: uncharacterized protein LOC104903087 [Beta vulgaris subsp. vulgaris]2.6e-1162.5Show/hide
Query:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        A+KQM PTKA GPDG  ALFYQKYWDIVG +     L++LN+ GDI + N+T+IAL
Subjt:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

XP_017635935.1 PREDICTED: uncharacterized protein LOC108478000 [Gossypium arboreum]3.4e-1161.11Show/hide
Query:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYI
        A+K++ PTKASGPDGFPA+FYQKYW+I+G  T E CLN+LN    +   NRT I
Subjt:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.8e-1775Show/hide
Query:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        AI+QMFPTKA GPDGFPALFYQ YW +VG KT+EACLN LN+  DI+ WN TYIAL
Subjt:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

TrEMBL top hitse value%identityAlignment
A0A5E4FZN9 PREDICTED: retrotransposon3.6e-1162.26Show/hide
Query:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        QMFPTKA G DG PALF+QKYW IVG K  + CL +LN  G +R +N T IAL
Subjt:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

A0A6J1DX30 uncharacterized protein LOC1110248749.0e-1875Show/hide
Query:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        AI+QMFPTKA GPDGFPALFYQ YW +VG KT+EACLN LN+  DI+ WN TYIAL
Subjt:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

A0A6P4PZC2 uncharacterized protein LOC1084780001.6e-1161.11Show/hide
Query:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYI
        A+K++ PTKASGPDGFPA+FYQKYW+I+G  T E CLN+LN    +   NRT I
Subjt:  AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYI

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)3.6e-1162.26Show/hide
Query:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        QMFPTKA G DG PALF+QKYW IVG K  + CL +LN  G +R +N T IAL
Subjt:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

M5WJW2 Reverse transcriptase domain-containing protein3.6e-1162.26Show/hide
Query:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL
        QMFPTKA G DG PALF+QKYW IVG K  + CL +LN  G +R +N T IAL
Subjt:  QMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAATTAAACAGATGTTCCCGACAAAAGCTTCTGGTCCTGATGGATTCCCCGCTCTTTTTTATCAGAAATATTGGGATATTGTGGGTCTAAAAACTATTGAGGCTTGCCT
AAATGTTCTTAACAGCAATGGAGATATTCGTGCTTGGAACAGAACATACATTGCCTTATTC
mRNA sequenceShow/hide mRNA sequence
GCAATTAAACAGATGTTCCCGACAAAAGCTTCTGGTCCTGATGGATTCCCCGCTCTTTTTTATCAGAAATATTGGGATATTGTGGGTCTAAAAACTATTGAGGCTTGCCT
AAATGTTCTTAACAGCAATGGAGATATTCGTGCTTGGAACAGAACATACATTGCCTTATTC
Protein sequenceShow/hide protein sequence
AIKQMFPTKASGPDGFPALFYQKYWDIVGLKTIEACLNVLNSNGDIRAWNRTYIALF