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MS018422 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018422
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold476:152146..152409
RNA-Seq ExpressionMS018422
SyntenyMS018422
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]1.6e-2058.62Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
        I N LK ++  +IS +QSAF+P + ITDN+IIG+ECLH I+  K   NG+VA+KLD+SKA+DRVEW +LE  M +LGF+A WIS IM
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
XP_022143493.1 uncharacterized protein LOC111013370 [Momordica charantia]1.7e-2260.23Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
        + N  K V+G +IS +QSAF+  +AITDNIIIGHECLH+I+  K G +G+ A+KLDLSKAFDRVEWTY+E +M   GFA  W++ IMR
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.4e-2670.45Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
        ITN LK VIGLVISD+QSAFVP +AI+DN+IIGHECLH I   K+G  GM A+KLDLSKAFDRVEWTYLE IMR +GF   WI  I++
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
XP_024043083.1 uncharacterized protein LOC112099827 [Citrus clementina]1.0e-1956.32Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
        I N LK+++  +IS +QSAF+P + I DN+IIG++CLH I+  K   NG+VA+KLD+SKA+DRVEW +LE  M +LGF+A WIS IM
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
XP_024956542.1 uncharacterized protein LOC112498908 [Citrus sinensis]7.3e-2156.82Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
        I N  K ++  +IS +QSAF+P++ ITDNII+G+ECLH I+  K+  NG+VA+KLD+SKA+DR+EW++LE IM+ LGF+  WIS IMR
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
TrEMBL top hitse value%identityAlignment
A0A2N9FB16 CCHC-type domain-containing protein4.6e-2157.47Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
        + N +KT++  VISDSQSAFVP + ITDN+II  E +HY+K L+NG N  +A+KLD+SKA+DRVEW YL++IM  LGF A W+  +M
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
A0A2N9FT59 Reverse transcriptase domain-containing protein2.1e-2157.47Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
        + N +KT++  VISDSQSAFVP + ITDN+II  E +HY+K L+NG N  +AIKLD+SKA+DRVEW YL++IM  LGF   W+  +M
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
A0A2N9GJ35 Uncharacterized protein4.6e-2157.47Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
        + N +KT++  VISDSQSAFVP + ITDN+II  E +HY+K L+NG N  +A+KLD+SKA+DRVEW YL++IM  LGF A W+  +M
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIM
A0A6J1CQU9 uncharacterized protein LOC1110133708.4e-2360.23Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
        + N  K V+G +IS +QSAF+  +AITDNIIIGHECLH+I+  K G +G+ A+KLDLSKAFDRVEWTY+E +M   GFA  W++ IMR
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
A0A6J1DX30 uncharacterized protein LOC1110248741.6e-2670.45Show/hide
Query:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
        ITN LK VIGLVISD+QSAFVP +AI+DN+IIGHECLH I   K+G  GM A+KLDLSKAFDRVEWTYLE IMR +GF   WI  I++
Subjt:  ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein1.7e-0431.71Show/hide
Query:  LKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQI
        LK+V+  VI   QS  VP + I DN+ +  + LH+ +  + G + +  + LD  KAFDRV+  YL   +++  F   ++  +
Subjt:  LKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQI
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases5.9e-1339.29Show/hide
Query:  LKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR
        LK ++  +I  +Q++F+P +  TDNI+   E +H ++  K G  G + +KLDL KA+DR+ W YLE  + S GF   W+ +I R
Subjt:  LKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAACTAATTGTCTTAAGACTGTCATTGGTTTGGTTATTTCTGATTCCCAATCGGCTTTTGTTCCATATCAAGCTATTACTGATAACATCATCATTGGTCATGAGTGCCT
TCATTACATAAAGGGGCTGAAGAATGGTTGTAATGGTATGGTTGCAATTAAGCTTGATCTAAGTAAAGCTTTTGACAGAGTTGAGTGGACTTATTTAGAATCTATAATGA
GAAGTTTAGGTTTTGCGGCAAGTTGGATCTCCCAAATTATGCGT
mRNA sequenceShow/hide mRNA sequence
ATAACTAATTGTCTTAAGACTGTCATTGGTTTGGTTATTTCTGATTCCCAATCGGCTTTTGTTCCATATCAAGCTATTACTGATAACATCATCATTGGTCATGAGTGCCT
TCATTACATAAAGGGGCTGAAGAATGGTTGTAATGGTATGGTTGCAATTAAGCTTGATCTAAGTAAAGCTTTTGACAGAGTTGAGTGGACTTATTTAGAATCTATAATGA
GAAGTTTAGGTTTTGCGGCAAGTTGGATCTCCCAAATTATGCGT
Protein sequenceShow/hide protein sequence
ITNCLKTVIGLVISDSQSAFVPYQAITDNIIIGHECLHYIKGLKNGCNGMVAIKLDLSKAFDRVEWTYLESIMRSLGFAASWISQIMR