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MS018426 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018426
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein S4
Genome locationscaffold476:155998..156261
RNA-Seq ExpressionMS018426
SyntenyMS018426
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002942 - RNA-binding S4 domain
IPR022801 - Ribosomal protein S4/S9
IPR036986 - RNA-binding S4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAW47278.1 ribosomal protein S4, partial [Lonicera sp. Bergthorsson 0301]1.4e-3588.64Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

AHJ81020.1 ribosomal protein S4 [Panax ginseng]4.0e-3587.5Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR   LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

ALE29211.1 ribosomal protein S4, partial [Heuchera parviflora var. saurensis]1.4e-3588.64Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

WP_131747055.1 hypothetical protein [Candidatus Frankia meridionalis]3.6e-3689.77Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVNKGMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

YP_009913620.1 ribosomal protein S4 [Luffa acutangula]9.4e-3790.91Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHFSETIPQARQ ISHRRVCVNKGMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

TrEMBL top hitse value%identityAlignment
A0A096XF98 Ribosomal protein S41.9e-3587.5Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR   LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

A0A0M4MT62 Ribosomal protein S4 (Fragment)6.6e-3688.64Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

A0A517LRL3 Ribosomal protein S41.9e-3587.5Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVN G+VSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

A0A7D6BZG8 Ribosomal protein S44.6e-3790.91Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHFSETIPQARQ ISHRRVCVNKGMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

Q5IA04 Ribosomal protein S4 (Fragment)6.6e-3688.64Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LNS IQSQTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQARQ ISHRRVCVN GMVSITHFKVS+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

SwissProt top hitse value%identityAlignment
P26866 Ribosomal protein S4, mitochondrial1.2e-1348.86Show/hide
Query:  NIQSQTTRNLSLFHGDLPITEMHRGTERT---SYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        +IQ QT + LSLF+G+LPI +M R    T     N    N+E R DVI VRL+F  T+ QARQ ISH+ +CVN   V+I  F+VS G+
Subjt:  NIQSQTTRNLSLFHGDLPITEMHRGTERT---SYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

Q31708 Ribosomal protein S4, mitochondrial2.3e-3379.55Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        L S IQ QTTR L  F+GDLPITEMHRGT+RTSY PF LNLETR DVIP+RL+F ETIPQARQ ISHRRVCVNKGMVSITHFK+S+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

Q9PE53 30S ribosomal protein S48.4e-0445.83Show/hide
Query:  LETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        LETR D +  R+ F+ T P ARQ +SHRRV VN  +V++  + V  G+
Subjt:  LETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

Arabidopsis top hitse value%identityAlignment
AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein7.7e-3782.95Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        L S IQ QTTR L LFHGDLPITEMHRGT+RTSY PFPLN ETR DVIP+RLHF ETIPQARQ ISHRRVCVNKGMVSITHFK+S+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE

ATMG00290.1 mitochondrial ribosomal protein S47.7e-3782.95Show/hide
Query:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE
        L S IQ QTTR L LFHGDLPITEMHRGT+RTSY PFPLN ETR DVIP+RLHF ETIPQARQ ISHRRVCVNKGMVSITHFK+S+G+
Subjt:  LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTAACAGTAACATCCAATCACAAACTACACGAAATTTGTCCCTTTTTCATGGGGATTTACCGATCACAGAGATGCATAGAGGAACAGAACGAACTTCTTATAACCCTTT
TCCACTCAATCTAGAAACAAGATCGGACGTTATTCCAGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGACAGTCGATAAGTCATCGAAGGGTTTGTGTGAATA
AGGGAATGGTAAGCATTACTCATTTTAAAGTGTCGTACGGTGAG
mRNA sequenceShow/hide mRNA sequence
CTTAACAGTAACATCCAATCACAAACTACACGAAATTTGTCCCTTTTTCATGGGGATTTACCGATCACAGAGATGCATAGAGGAACAGAACGAACTTCTTATAACCCTTT
TCCACTCAATCTAGAAACAAGATCGGACGTTATTCCAGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGACAGTCGATAAGTCATCGAAGGGTTTGTGTGAATA
AGGGAATGGTAAGCATTACTCATTTTAAAGTGTCGTACGGTGAG
Protein sequenceShow/hide protein sequence
LNSNIQSQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHRRVCVNKGMVSITHFKVSYGE