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MS018433 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018433
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold476:277650..277934
RNA-Seq ExpressionMS018433
SyntenyMS018433
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_013690321.1 uncharacterized protein LOC106394286 [Brassica napus]4.8e-1850.53Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +LINGE +GK+L +  LRQG+PLSP+LF LCTEGLS  L  A  R  ++GI  +++ P+I H+FF+DD+L+  K N  +C+ V KIL+E E   G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
XP_013745771.1 uncharacterized protein LOC106448430 [Brassica napus]1.1e-1749.47Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +LINGE +GK++ +  LRQG+PLSP+LF LCTEGLS  L  A  R  ++GI  +++ P+I H+FF+DD+L+  K N  +C+ V KIL+E E   G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
XP_018462177.1 PREDICTED: uncharacterized protein LOC108833246 [Raphanus sativus]1.8e-1749.47Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +LINGE +GK++ +  LRQG+PLSP+LF LCTEGL+  L  A  R  ++GI   DN P + H+FF+DD+L+  K N  +C+ V KIL+E E+  G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
XP_018479119.1 PREDICTED: uncharacterized protein LOC108850033 [Raphanus sativus]1.1e-1750.53Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +LINGE +GK+L    LRQGNPLSP+LF LCTEGLS  L  A  R  ++GI  ++  P + H+FF+DD+L+  K N  +C+ V KIL+E E   G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
XP_030939975.1 uncharacterized protein LOC115964883 [Quercus lobata]2.0e-1646.32Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +L+NGE  G       LRQG+PLSPYLFLLC EGL   +Q A I  T+ G+ +    P +SH+FF+DD+L+F + N+ + S +M+IL++ E A G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
TrEMBL top hitse value%identityAlignment
A0A2N9HCL8 Reverse transcriptase domain-containing protein2.5e-1749.47Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +L+NGE RG I  +  +RQG+PLSPYLFLLC EGLS  L+ A   R ++G+ I    P ISH+ F+DD+L+F+  +  +CS +M++LQ  ERA G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
A0A5B7BAS3 Reverse transcriptase domain-containing protein (Fragment)9.7e-1750.53Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        LL+NG ++G I  +  LRQG+PLSPYLFLLCTEGLS  L  A   R + G+ I  +CP I+H+FF+DD+LIF + +   C  + KIL E E   G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
A0A6J0LQD9 uncharacterized protein LOC1088332468.7e-1849.47Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +LINGE +GK++ +  LRQG+PLSP+LF LCTEGL+  L  A  R  ++GI   DN P + H+FF+DD+L+  K N  +C+ V KIL+E E+  G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
A0A6J0N3V1 uncharacterized protein LOC1088500335.1e-1850.53Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        +LINGE +GK+L    LRQGNPLSP+LF LCTEGLS  L  A  R  ++GI  ++  P + H+FF+DD+L+  K N  +C+ V KIL+E E   G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
A0A7N2L6Z9 Reverse transcriptase domain-containing protein7.4e-1749.47Show/hide
Query:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
        ++INGE  G I+ T  LRQG+PLSPYLFLLC EGLS  L  A   + ++GI +   CP I+H+FF+DD+L+F K N  +C  + +IL++ E A G
Subjt:  LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG
SwissProt top hitse value%identityAlignment
P92555 Uncharacterized mitochondrial protein AtMg012502.2e-1046.27Show/hide
Query:  LINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDD
        +ING  +G +  +  LRQG+PLSPYLF+LCTE LS   + A  +  + GI +++N P I+H+ F+DD
Subjt:  LINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDD
Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.6e-1146.27Show/hide
Query:  LINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDD
        +ING  +G +  +  LRQG+PLSPYLF+LCTE LS   + A  +  + GI +++N P I+H+ F+DD
Subjt:  LINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTACTCATAAACGGTGAGGCAAGAGGGAAGATCCTTCTTACCAATAAGTTACGACAAGGGAATCCTTTATCACCTTACCTCTTCCTTCTATGCACAGAGGGTTTATCCTT
CTCCTTACAAGTGGCTCATATAAGGCGTACAGTCTCAGGTATCTTCATAAATGACAATTGCCCTAACATTTCGCACATTTTCTTTTCTGATGACAACTTAATCTTCTTCA
AAACTAATGCTTTCAAATGCTCTTATGTCATGAAGATCCTACAGGAGTGTGAAAGGGCAGAAGGC
mRNA sequenceShow/hide mRNA sequence
CTACTCATAAACGGTGAGGCAAGAGGGAAGATCCTTCTTACCAATAAGTTACGACAAGGGAATCCTTTATCACCTTACCTCTTCCTTCTATGCACAGAGGGTTTATCCTT
CTCCTTACAAGTGGCTCATATAAGGCGTACAGTCTCAGGTATCTTCATAAATGACAATTGCCCTAACATTTCGCACATTTTCTTTTCTGATGACAACTTAATCTTCTTCA
AAACTAATGCTTTCAAATGCTCTTATGTCATGAAGATCCTACAGGAGTGTGAAAGGGCAGAAGGC
Protein sequenceShow/hide protein sequence
LLINGEARGKILLTNKLRQGNPLSPYLFLLCTEGLSFSLQVAHIRRTVSGIFINDNCPNISHIFFSDDNLIFFKTNAFKCSYVMKILQECERAEG