CuGenDBv2

Gene ID	MS018435
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-directed DNA polymerase (reverse transcriptase)-related family protein
Genome location	scaffold476:278389..278609
RNA-Seq Expression	MS018435
Synteny	MS018435
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]

8.9e-09

47.14

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI
        WR+L   N+LVSRVLK +YFHD  +L+ +   + SY W+   +  +LL+KGLR RVGNG +I      WI
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

4.4e-08

48.57

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI
        WR L   NLLVS+VLK +YF D S+L+ S N+ +SY W+   +  +LL+KGLR RVGNG +I      W+
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI

XP_022545183.1 uncharacterized protein LOC111199409 [Brassica napus]

7.5e-08

45.07

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWIS
        WRI+   N L++RVL+ RYF DG ILK +  N +SY W+   Y  EL++KG+R  +GNG S       W+S
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWIS

XP_027067616.1 uncharacterized protein LOC113693252 [Coffea arabica]

2.2e-07

48.57

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI
        WRIL Q NLLVS+VLK +YF   SI K    N+ S++W    +  EL+ +G+RRR+GNGRS      +WI
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI

XP_027174549.1 uncharacterized protein LOC113774182 [Coffea eugenioides]

2.2e-07

48.57

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI
        WRIL Q NLLVS+VLK +YF   SI K    N+ S++W    +  EL+ +G+RRR+GNGRS      +WI
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BRN0 uncharacterized protein LOC111004787

4.3e-09

47.14

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI
        WR+L   N+LVSRVLK +YFHD  +L+ +   + SY W+   +  +LL+KGLR RVGNG +I      WI
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI

A0A6J1DX30 uncharacterized protein LOC111024874

2.1e-08

48.57

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI
        WR L   NLLVS+VLK +YF D S+L+ S N+ +SY W+   +  +LL+KGLR RVGNG +I      W+
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI

A0A6P6SP31 uncharacterized protein LOC113693252

1.1e-07

48.57

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI
        WRIL Q NLLVS+VLK +YF   SI K    N+ S++W    +  EL+ +G+RRR+GNGRS      +WI
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI

A0A6P6TGA6 uncharacterized protein LOC113700836

3.1e-07

45.07

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWIS
        WRIL + NLL+S+++K RYF   SI K+  +  NS  W+   +  ELL KG+++RVG+G+SI   + RW+S
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWIS

A0A6P6W2K0 uncharacterized protein LOC113728591

2.4e-07

48.57

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI
        WRILMQ NLL+SRV+K RYF   SI        +S+ W+      E+L +GLRRRVG+G SI   + RW+
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYD-NELLLKGLRRRVGNGRSICFSKYRWI

SwissProt top hits

e value

%identity

Alignment

P93295 Uncharacterized mitochondrial protein AtMg00310

1.1e-04

37.14

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI
        +RI+ Q + L+SR+L+ RYF   S+++ S     SY W    +  ELL +GL R +G+G        RWI
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

1.0e-07

32.88

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWISPK
        WR+L +   L+++V K RYFH    L     +  S++W+  +   E+L +G R  VGNG  I   +++W+  K
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWISPK

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

7.5e-06

37.14

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Query:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI
        +RI+ Q + L+SR+L+ RYF   S+++ S     SY W    +  ELL +GL R +G+G        RWI
Subjt:  WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEK-NYDNELLLKGLRRRVGNGRSICFSKYRWI

Sequences

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CDS sequence

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TGGCGGATCCTGATGCAGTCCAATCTCCTAGTCTCTCGTGTTCTTAAAGGAAGATACTTTCATGATGGGTCAATATTAAAGACATCAGAAAACAATCATAATTCCTATCT
TTGGGAAAAAAATTACGACAATGAGCTTCTTCTCAAAGGGCTTCGAAGGAGAGTGGGAAATGGTAGATCAATTTGTTTCTCTAAATACAGATGGATATCCCCAAAG

mRNA sequence

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Protein sequence

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WRILMQSNLLVSRVLKGRYFHDGSILKTSENNHNSYLWEKNYDNELLLKGLRRRVGNGRSICFSKYRWISPK

MS018435 (gene) of Bitter gourd (TR) v1 genome