CuGenDBv2

Gene ID	MS018517
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase
Genome location	scaffold417:100258..100437
RNA-Seq Expression	MS018517
Synteny	MS018517
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA3460557.1 reverse transcriptase [Gossypium australe]

5.5e-12

66.67

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLISDNV+I +E LH L  K  GK+G++A+K DMSKAY+RVE  YLKKVM +MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

KAA3462561.1 reverse transcriptase [Gossypium australe]

3.2e-12

61.67

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLISDNV++ +E LH L NK +GK+G++A+K DMSKA++RV+  ++KKVME+MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

KAA3489426.1 reverse transcriptase [Gossypium australe]

3.2e-12

66.67

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLISDNV+I +E LH L  K SGK+G +A+K DMSKAY+RVE  YLK VM +MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

KAF5447348.1 hypothetical protein F2P56_032905 [Juglans regia]

5.5e-12

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLISDN+I+ FE LH ++++  GKEG++A+K DMSKAY+R+E  +LK+VM +MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

XP_030945846.1 uncharacterized protein LOC115970339 [Quercus lobata]

5.5e-12

61.67

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AF+SGRLISDNV++ FE LH L  K  GK G +A+K DMSKAY+RVE V+L+K+M+++GF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

TrEMBL top hits

e value

%identity

Alignment

A0A2N9IP69 Reverse transcriptase domain-containing protein

2.7e-12

63.33

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLI+DN++I FE LH +NN+ SGK G +A+K DMSKAY+RVE  +LK+VM +MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

A0A5B6UUC2 Reverse transcriptase

2.7e-12

66.67

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLISDNV+I +E LH L  K  GK+G++A+K DMSKAY+RVE  YLKKVM +MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

A0A5B6V0I7 Reverse transcriptase

1.6e-12

61.67

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLISDNV++ +E LH L NK +GK+G++A+K DMSKA++RV+  ++KKVME+MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

A0A5B6X795 Reverse transcriptase

1.6e-12

66.67

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GRLISDNV+I +E LH L  K SGK+G +A+K DMSKAY+RVE  YLK VM +MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

A0A7N2LIH6 Uncharacterized protein

2.0e-12

58.33

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        AFV GR+I+DNVI+ FE +H++N +  GKEG++A+K DMSKAY+RVE  YL+ +M++MGF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G20520.1 RNA binding;RNA-directed DNA polymerases

2.4e-05

33.33

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Query:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF
        +F+ GR+ +DN++   E +H++  K  G +G + +K D+ KAY+R+   YL+  +   GF
Subjt:  AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

Sequences

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CDS sequence

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GCCTTTGTGTCAGGAAGACTCATTTCTGACAATGTCATCATTGGGTTTGAGTGCCTTCATGCGCTAAACAACAAGTGGTCAGGTAAGGAAGGGGTAGTTGCGATGAAAAC
TGACATGAGCAAAGCTTACGAAAGGGTGGAATTGGTGTATCTGAAGAAAGTTATGGAAAGAATGGGCTTT

mRNA sequence

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GCCTTTGTGTCAGGAAGACTCATTTCTGACAATGTCATCATTGGGTTTGAGTGCCTTCATGCGCTAAACAACAAGTGGTCAGGTAAGGAAGGGGTAGTTGCGATGAAAAC
TGACATGAGCAAAGCTTACGAAAGGGTGGAATTGGTGTATCTGAAGAAAGTTATGGAAAGAATGGGCTTT

Protein sequence

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AFVSGRLISDNVIIGFECLHALNNKWSGKEGVVAMKTDMSKAYERVELVYLKKVMERMGF

MS018517 (gene) of Bitter gourd (TR) v1 genome