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MS018518 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018518
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold417:100726..100956
RNA-Seq ExpressionMS018518
SyntenyMS018518
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU20068.1 hypothetical protein TSUD_381600 [Trifolium subterraneum]4.0e-0747.83Show/hide
Query:  TCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        T E ASG  IN++KS    S+NT+   +S+I   L V  +   G +LGLPS + RDK  IFS IKDR+W
Subjt:  TCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

XP_021647684.1 uncharacterized protein LOC110640623 [Hevea brasiliensis]6.2e-0845.21Show/hide
Query:  EEFQTCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        E  Q  EKASG IINF+KS    S NT ++++  I+Q L++     LG +LGLP+ V R+K  +F+ I+D+VW
Subjt:  EEFQTCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]2.5e-0950.82Show/hide
Query:  IINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        ++N+EKSMFM S+NT + + + I+ EL V  T+ +G +LGLPSQ SR+KC++F++I +RVW
Subjt:  IINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]3.2e-1257.75Show/hide
Query:  QTCEKA-SGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        ++ EKA SG  IN +KSMF+ SKNTK++M   I+QEL V  T+SLG +LGLPSQ  R+K ++F++IKDRVW
Subjt:  QTCEKA-SGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

XP_027109435.1 uncharacterized protein LOC113729327 [Coffea arabica]3.1e-0744.29Show/hide
Query:  QTCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        Q  EKASG  +NF+KS    S N  +++++ I Q L +P+ +    +LGLP  + R K +IF+SIKDRVW
Subjt:  QTCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

TrEMBL top hitse value%identityAlignment
A0A2Z6MC97 RNase H domain-containing protein1.9e-0747.83Show/hide
Query:  TCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        T E ASG  IN++KS    S+NT+   +S+I   L V  +   G +LGLPS + RDK  IFS IKDR+W
Subjt:  TCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

A0A6J1CV63 uncharacterized protein LOC1110146621.2e-0950.82Show/hide
Query:  IINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        ++N+EKSMFM S+NT + + + I+ EL V  T+ +G +LGLPSQ SR+KC++F++I +RVW
Subjt:  IINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

A0A6J1DUG8 uncharacterized protein LOC1110241351.5e-1257.75Show/hide
Query:  QTCEKA-SGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        ++ EKA SG  IN +KSMF+ SKNTK++M   I+QEL V  T+SLG +LGLPSQ  R+K ++F++IKDRVW
Subjt:  QTCEKA-SGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

A0A6P6W3D0 uncharacterized protein LOC1137293271.5e-0744.29Show/hide
Query:  QTCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        Q  EKASG  +NF+KS    S N  +++++ I Q L +P+ +    +LGLP  + R K +IF+SIKDRVW
Subjt:  QTCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

A0A803QHU6 Uncharacterized protein8.7e-0842.03Show/hide
Query:  TCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW
        T  KASG ++N +KS+   S NT +  +++  Q L++P+T+    +LGLPS   RDK  +FS+IK+R+W
Subjt:  TCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTACCAAACAATGAAGAGTTTCAGACTTGTGAAAAAGCATCAGGCCATATTATAAATTTTGAAAAATCAATGTTCATGGCCAGTAAGAATACGAAAAAGGAAATGAAGTC
TTACATACAACAAGAACTCAAAGTTCCACTCACTGATTCATTGGGCCTTCACCTGGGGCTTCCTTCTCAAGTTTCAAGAGATAAATGTCGTATTTTTAGCTCTATCAAGG
ATAGGGTGTGG
mRNA sequenceShow/hide mRNA sequence
CTACCAAACAATGAAGAGTTTCAGACTTGTGAAAAAGCATCAGGCCATATTATAAATTTTGAAAAATCAATGTTCATGGCCAGTAAGAATACGAAAAAGGAAATGAAGTC
TTACATACAACAAGAACTCAAAGTTCCACTCACTGATTCATTGGGCCTTCACCTGGGGCTTCCTTCTCAAGTTTCAAGAGATAAATGTCGTATTTTTAGCTCTATCAAGG
ATAGGGTGTGG
Protein sequenceShow/hide protein sequence
LPNNEEFQTCEKASGHIINFEKSMFMASKNTKKEMKSYIQQELKVPLTDSLGLHLGLPSQVSRDKCRIFSSIKDRVW