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MS018524 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018524
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold417:202057..202345
RNA-Seq ExpressionMS018524
SyntenyMS018524
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-0639.76Show/hide
Query:  KDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQ-KKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL
        +  L+ +IWK + P KIK F  C L  + +NT EV+Q + P   + PS C  C +   S  H+ LHC+ +   WSFL N F L
Subjt:  KDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQ-KKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL

TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]3.1e-0945.05Show/hide
Query:  LTTHSLKIKDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL
        LT  S  I   LI  IWK    K++K FFL SLA +SLNT++ +QK      +SPS CC CF+   +L H+ LHC     +W+ LF +FDL
Subjt:  LTTHSLKIKDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL

TYK21876.1 hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]6.7e-0432.91Show/hide
Query:  LITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL
        L + I +   P++I +  +  +  + +N+ E+LQKK    +SPS C  C +A  +L HI L+C + S  W  +F++F+L
Subjt:  LITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]2.4e-0939.58Show/hide
Query:  LTTHSLKIKDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDLHSCMP
        +T  + K   S + LIWK    KK+K FFL SLA +SLN    LQ+K P   +SPS C  C +   +  H+ LHC      W+ +F++F L  C+P
Subjt:  LTTHSLKIKDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDLHSCMP

TrEMBL top hitse value%identityAlignment
A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein2.6e-0639.76Show/hide
Query:  KDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQ-KKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL
        +  L+ +IWK + P KIK F  C L  + +NT EV+Q + P   + PS C  C +   S  H+ LHC+ +   WSFL N F L
Subjt:  KDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQ-KKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein9.4e-0437.84Show/hide
Query:  LITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFL
        L+ LIWK   P KIK F  C L  + LNT EV+Q++ P   + P+ C  C +   +  H+  HC ++   WS L
Subjt:  LITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFL

A0A5D3C7R2 DUF21 domain-containing protein1.5e-0945.05Show/hide
Query:  LTTHSLKIKDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL
        LT  S  I   LI  IWK    K++K FFL SLA +SLNT++ +QK      +SPS CC CF+   +L H+ LHC     +W+ LF +FDL
Subjt:  LTTHSLKIKDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKK-PTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL

A0A5D3DE60 zf-RVT domain-containing protein3.2e-0432.91Show/hide
Query:  LITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL
        L + I +   P++I +  +  +  + +N+ E+LQKK    +SPS C  C +A  +L HI L+C + S  W  +F++F+L
Subjt:  LITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTAACTACTCACTCTCTCAAGATTAAAGATTCCTTGATTACGTTGATTTGGAAGTTTTCCTGCCCAAAGAAAATCAAAGTTTTTTTTTTGTGTAGTTTAGCCCTCAAAAG
CCTAAACACCTACGAGGTTCTGCAAAAAAAACCCACCTGGGGTATTTCGCCCTCAACGTGCTGCTTTTGTTTTCGGGCACCTGGAAGTCTATACCACATCTTATTACATT
GTAAAATCATCTCTCTTTCTTGGTCCTTCTTGTTTAATGTGTTCGACCTTCATAGCTGCATGCCC
mRNA sequenceShow/hide mRNA sequence
TTAACTACTCACTCTCTCAAGATTAAAGATTCCTTGATTACGTTGATTTGGAAGTTTTCCTGCCCAAAGAAAATCAAAGTTTTTTTTTTGTGTAGTTTAGCCCTCAAAAG
CCTAAACACCTACGAGGTTCTGCAAAAAAAACCCACCTGGGGTATTTCGCCCTCAACGTGCTGCTTTTGTTTTCGGGCACCTGGAAGTCTATACCACATCTTATTACATT
GTAAAATCATCTCTCTTTCTTGGTCCTTCTTGTTTAATGTGTTCGACCTTCATAGCTGCATGCCC
Protein sequenceShow/hide protein sequence
LTTHSLKIKDSLITLIWKFSCPKKIKVFFLCSLALKSLNTYEVLQKKPTWGISPSTCCFCFRAPGSLYHILLHCKIISLSWSFLFNVFDLHSCMP