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MS018533 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018533
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold417:389528..389857
RNA-Seq ExpressionMS018533
SyntenyMS018533
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042513.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]8.3e-1956.07Show/hide
Query:  SFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWI
        +F+EFFK   LN  L E  +C++ KK+ A  V+DFRP SL TS+YK++AK LA RL+KV  STI + Q  F+ GRQILD +LIA EA+ED + RKK+G +
Subjt:  SFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWI

Query:  LKLDFEK
        L+LDFEK
Subjt:  LKLDFEK

TYK02022.1 uncharacterized protein E5676_scaffold680G00040 [Cucumis melo var. makuwa]1.5e-2362.62Show/hide
Query:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKVAS-TISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL
        F+   +N +LNAC++EN +CL+ KK+ AI V+D RPISLTT  YKV+AK LA++LK V +  IS  QS FIE RQILDPILIA +A+EDY   KKKGWIL
Subjt:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKVAS-TISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL

Query:  KLDFEKA
        KLD EKA
Subjt:  KLDFEKA

TYK05916.1 uncharacterized protein E5676_scaffold376G00070 [Cucumis melo var. makuwa]8.3e-1956.07Show/hide
Query:  SFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWI
        +F+EFFK   LN  L E  +C++ KK+ A  V+DFRP SL TS+YK++AK LA RL+KV  STI + Q  F+ GRQILD +LIA EA+ED + RKK+G +
Subjt:  SFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWI

Query:  LKLDFEK
        L+LDFEK
Subjt:  LKLDFEK

XP_028073850.1 uncharacterized protein LOC114276257 [Camellia sinensis]8.3e-1947.27Show/hide
Query:  LRSFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKG
        +R F EFF++  +N C     +CL+PKK+ ++++ DFRPISL TSLYK++ K L++R++ V   TIS  Q  F+ GRQILD +L+A E +E+Y+   K+G
Subjt:  LRSFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKG

Query:  WILKLDFEKA
         + K+DFEKA
Subjt:  WILKLDFEKA

XP_038905468.1 probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [Benincasa hispida]3.2e-2663.55Show/hide
Query:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL
        F+EF++N +LN+C++EN +CL+ KK   + VKDFRPIS +T +YK+IAK LAERLKKV  S IS  QS FIEGRQILDP+LIA EA+E Y+ +KKK W+L
Subjt:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL

Query:  KLDFEKA
        KLD EKA
Subjt:  KLDFEKA

TrEMBL top hitse value%identityAlignment
A0A5D3BT88 Reverse transcriptase domain-containing protein7.1e-2462.62Show/hide
Query:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKVAS-TISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL
        F+   +N +LNAC++EN +CL+ KK+ AI V+D RPISLTT  YKV+AK LA++LK V +  IS  QS FIE RQILDPILIA +A+EDY   KKKGWIL
Subjt:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKVAS-TISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL

Query:  KLDFEKA
        KLD EKA
Subjt:  KLDFEKA

A0A803P8A0 Uncharacterized protein2.5e-2156.07Show/hide
Query:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL
        F  F    R+   + +  +CL+PK+  + +VKDFRPISL TS+YK+IAK LA RL+ V   TISE QS F+EGRQILD +L+A EA+EDY+ R KKG++L
Subjt:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL

Query:  KLDFEKA
        K+DFEKA
Subjt:  KLDFEKA

A0A803QEA6 Uncharacterized protein5.6e-2155.14Show/hide
Query:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL
        F  F +  R+   + +  +CL+PK+  + +VKDFRPISL TS+YK+IAK LA RL+ V   TISE QS F+EGRQILD +L+A EA+EDY+ R +KG++L
Subjt:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL

Query:  KLDFEKA
        K+DFEKA
Subjt:  KLDFEKA

A0A803QI00 Uncharacterized protein4.8e-2054.21Show/hide
Query:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL
        F  F K  R+   + E  +CL+PK+  + +VKDFRPISL TS+YK++AK LA RL+ V   TISE QS F+EGRQILD +LIA E +ED++ R KKG++ 
Subjt:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL

Query:  KLDFEKA
        K+D EKA
Subjt:  KLDFEKA

A0A803QQM3 Uncharacterized protein1.3e-2055.14Show/hide
Query:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL
        F  F +  R+   + +  +CL+PK+  + +VKD+RPISL TS+YK+IAK LA RL+ V   TISE QS F+EGRQILD +L+A EA+EDY+ R KKG +L
Subjt:  FEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIA-EAMEDYKGRKKKGWIL

Query:  KLDFEKA
        K+DFEKA
Subjt:  KLDFEKA

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein8.4e-0636.7Show/hide
Query:  RSFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIAEAMEDYKGRKKKGW-
        R   E FK   L    R  +L LLPKK     +K++RP+SL ++ YK++AK ++ RLK V A  I   QS  + GR I D + +   +  +  R      
Subjt:  RSFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAK-LAERLKKV-ASTISEKQSTFIEGRQILDPILIAEAMEDYKGRKKKGW-

Query:  ILKLDFEKA
         L LD EKA
Subjt:  ILKLDFEKA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGCGTTCGTTTGAAGAATTCTTCAAAAACGAGCGCCTCAATGCTTGTTTAAGGGAGAACCTTTTATGCCTTTTACCTAAAAAAGACTTGGCCATTGAAGTGAAAGACTT
CAGACCTATAAGTCTCACTACCTCTTTGTACAAAGTCATAGCAAAACTAGCTGAGCGCCTTAAAAAAGTTGCTTCCACCATCTCTGAAAAACAAAGCACCTTCATTGAGG
GACGACAAATTCTAGATCCAATTTTGATTGCAGAAGCTATGGAAGATTACAAAGGCAGAAAGAAGAAAGGTTGGATTCTTAAATTGGATTTTGAGAAAGCTTTG
mRNA sequenceShow/hide mRNA sequence
TTGCGTTCGTTTGAAGAATTCTTCAAAAACGAGCGCCTCAATGCTTGTTTAAGGGAGAACCTTTTATGCCTTTTACCTAAAAAAGACTTGGCCATTGAAGTGAAAGACTT
CAGACCTATAAGTCTCACTACCTCTTTGTACAAAGTCATAGCAAAACTAGCTGAGCGCCTTAAAAAAGTTGCTTCCACCATCTCTGAAAAACAAAGCACCTTCATTGAGG
GACGACAAATTCTAGATCCAATTTTGATTGCAGAAGCTATGGAAGATTACAAAGGCAGAAAGAAGAAAGGTTGGATTCTTAAATTGGATTTTGAGAAAGCTTTG
Protein sequenceShow/hide protein sequence
LRSFEEFFKNERLNACLRENLLCLLPKKDLAIEVKDFRPISLTTSLYKVIAKLAERLKKVASTISEKQSTFIEGRQILDPILIAEAMEDYKGRKKKGWILKLDFEKAL