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MS018534 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS018534
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionShikimate dehydrogenase
Genome locationscaffold417:434519..435088
RNA-Seq ExpressionMS018534
SyntenyMS018534
Gene Ontology termsGO:0008652 - cellular amino acid biosynthetic process (biological process)
GO:0009073 - aromatic amino acid family biosynthetic process (biological process)
GO:0009423 - chorismate biosynthetic process (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0019632 - shikimate metabolic process (biological process)
GO:0003855 - 3-dehydroquinate dehydratase activity (molecular function)
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity (molecular function)
GO:0050661 - NADP binding (molecular function)
InterPro domainsIPR022893 - Shikimate dehydrogenase family
IPR036291 - NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141974.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Cucumis sativus]2.4e-3282.95Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELAD VGGQ VSLADLENFHP+DGMIL N+T I MQP+VDETPIPKHALK Y LVFDAVYTPRMTRLLRE EE GAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

XP_008440089.1 PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Cucumis melo]5.4e-3280.68Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELAD VGGQ +SLADL+NFHP++GMILAN+T I MQP+VDETPIPKHALK+Y LVFDAVYTPRMTRLLRE EE GAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

XP_022132958.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Momordica charantia]2.7e-3687.5Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELADSVGGQ VSLADLENFHP+DGMILANSTSI MQP+VDETP+PKHALKYY LVFDAVYTPRMTRLLRE +ECGAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

XP_038882078.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X1 [Benincasa hispida]4.1e-3281.82Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELAD VGGQ VSLA LENFHP+DGMILAN+T I MQP+VDETPIPKHAL+YY LVFDAVY PRMTRLLRE EE GAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

XP_038882079.1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X2 [Benincasa hispida]4.1e-3281.82Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELAD VGGQ VSLA LENFHP+DGMILAN+T I MQP+VDETPIPKHAL+YY LVFDAVY PRMTRLLRE EE GAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

TrEMBL top hitse value%identityAlignment
A0A059AB03 Shikimate dehydrogenase9.9e-3276.14Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELA+++GG  +SLADLENFHP+DGMILAN+TSI MQP+VDETPIPKHALK+Y LVFDAVYTP++TRLL+E EECGA IV G E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

A0A0A0KFV4 Uncharacterized protein1.2e-3282.95Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELAD VGGQ VSLADLENFHP+DGMIL N+T I MQP+VDETPIPKHALK Y LVFDAVYTPRMTRLLRE EE GAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

A0A1S3B0X5 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like2.6e-3280.68Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELAD VGGQ +SLADL+NFHP++GMILAN+T I MQP+VDETPIPKHALK+Y LVFDAVYTPRMTRLLRE EE GAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

A0A5D3CN48 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase7.5e-3279.55Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELAD VGGQ +SL DL+NFHP++GMILAN+T I MQP+VDETPIPKHALK+Y LVFDAVYTPRMTRLLRE EE GAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

A0A6J1BXP9 Shikimate dehydrogenase1.3e-3687.5Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        DR RELADSVGGQ VSLADLENFHP+DGMILANSTSI MQP+VDETP+PKHALKYY LVFDAVYTPRMTRLLRE +ECGAAIVPG E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

SwissProt top hitse value%identityAlignment
B0R386 Shikimate dehydrogenase (NADP(+))1.8e-0639.51Show/hide
Query:  ELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG
        ELA  VGG  V L DL      D  +L ++T++ M  + D +P+   AL     V DAVY+P  TRLLR+    GA  + G
Subjt:  ELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG

Q18KS0 Shikimate dehydrogenase (NADP(+))3.0e-0938.82Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG
        +R   +A  +GGQ  +          D  IL N+TS+ M P+ ++TP+P+  L    +V DAVYTP  TRLLRE    GA  + G
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG

Q3ITN9 Shikimate dehydrogenase (NADP(+))1.9e-0843.21Show/hide
Query:  ELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG
        E+ D+ G  +  LA+L      D  +L N+TS+ M  E DETP+PK  L     V DAVY P  TRLLRE +  GA  + G
Subjt:  ELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG

Q5V450 Shikimate dehydrogenase (NADP(+))1.4e-0643.21Show/hide
Query:  ELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG
        E+ D+ G  + SL+DL      +  IL N TS+ M  E D+TP+P  AL     V DAVYTP  TRLL++    GA  V G
Subjt:  ELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPG

Q9SQT8 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic1.4e-2764.77Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        +R  ELA+++GG+ +SL DL+N+HP+DGM+LAN+TS+ MQP V+ETPI K ALK+Y LVFDAVYTPR+TRLLRE EE GA  V G E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI

Arabidopsis top hitse value%identityAlignment
AT3G06350.1 dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative1.0e-2864.77Show/hide
Query:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI
        +R  ELA+++GG+ +SL DL+N+HP+DGM+LAN+TS+ MQP V+ETPI K ALK+Y LVFDAVYTPR+TRLLRE EE GA  V G E+
Subjt:  DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATCGGGATAGAGAACTTGCAGACTCTGTCGGGGGACAGGTCGTGTCTCTTGCCGACTTAGAAAATTTTCACCCAAAAGATGGTATGATTCTTGCCAACTCAACATCAAT
CAGAATGCAGCCCGAAGTTGATGAAACTCCCATTCCAAAGCATGCTCTGAAATACTACTGGCTGGTTTTCGATGCGGTTTACACACCCAGGATGACCAGACTCTTGAGGG
AAACTGAAGAGTGTGGAGCAGCCATTGTTCCTGGATTTGAGATT
mRNA sequenceShow/hide mRNA sequence
GATCGGGATAGAGAACTTGCAGACTCTGTCGGGGGACAGGTCGTGTCTCTTGCCGACTTAGAAAATTTTCACCCAAAAGATGGTATGATTCTTGCCAACTCAACATCAAT
CAGAATGCAGCCCGAAGTTGATGAAACTCCCATTCCAAAGCATGCTCTGAAATACTACTGGCTGGTTTTCGATGCGGTTTACACACCCAGGATGACCAGACTCTTGAGGG
AAACTGAAGAGTGTGGAGCAGCCATTGTTCCTGGATTTGAGATT
Protein sequenceShow/hide protein sequence
DRDRELADSVGGQVVSLADLENFHPKDGMILANSTSIRMQPEVDETPIPKHALKYYWLVFDAVYTPRMTRLLRETEECGAAIVPGFEI